View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_22 (Length: 238)
Name: NF8839_low_22
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45981007 - 45980785
Alignment:
| Q |
1 |
actcataaacctcttggttctagcaccactaaaataaagtaaaatttgcgtaaaacaacaccctagatatttaatataagtccaacgatgtataagatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45981007 |
actcataaacctcttggttctagcaccactaaaataaagtaaaatttgcgaaaaacaacaccctagatatttaatataagtccaacgatgtataagatca |
45980908 |
T |
|
| Q |
101 |
agtgtaaatgacaaagaactaacaactcaacattaattaacttaagaacctcaatacaatctacaaagtgattatacagcacaaagaccaatgaacagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
45980907 |
agtgtaaatgacaaagaactaacaactcaacattaattaacttaagaacctcaatacaatctacaaagtgattatacaacacaaagaccaatgagtagtg |
45980808 |
T |
|
| Q |
201 |
accatgctcacttgagatcaaac |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45980807 |
accatgctcacttgagatcaaac |
45980785 |
T |
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