View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_24 (Length: 227)
Name: NF8839_low_24
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 14527621 - 14527399
Alignment:
| Q |
5 |
gcatgaacctacatcctagcataattttgtccactaaaaagtgccgagaactacaatttatttacctcctgaactcccattttcaacttccttgttaaga |
104 |
Q |
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| T |
14527621 |
gcatgaagctacatcctagcataattttgtccactaaaaagtgccgagaactacaatttatttacctcctgaactcccattttcaacttccttgttaaga |
14527522 |
T |
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| Q |
105 |
aagtcagtgttggagtacctcatgaagcatccggtgttgagcgcccgtccttctgacgagggcagacatctcaaaatagaagatgatgcatgctcgagac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14527521 |
aagtcagtgttggagtacctcatgaagcatccggtgttgagcgcccgtccttctgacgagggcagacatctcaaaatagaagatgacgcatgctcgagac |
14527422 |
T |
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| Q |
205 |
atgctttgcaagacttagaatcc |
227 |
Q |
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| T |
14527421 |
atgctttgcaagacttagaatcc |
14527399 |
T |
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