View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_27 (Length: 219)
Name: NF8839_low_27
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_27 |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4316311 - 4316529
Alignment:
| Q |
1 |
acagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacatcatgacgaacct |
100 |
Q |
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| T |
4316311 |
acagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacagcatgacgaatct |
4316410 |
T |
|
| Q |
101 |
ttgaaatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatccccatttaggac |
200 |
Q |
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| T |
4316411 |
ttgaaatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaatataatccccatttaggac |
4316510 |
T |
|
| Q |
201 |
gtgattgtcccaagaactc |
219 |
Q |
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||||||||||||||||||| |
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| T |
4316511 |
gtgattgtcccaagaactc |
4316529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 5936155 - 5935941
Alignment:
| Q |
5 |
cacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacatcatgacgaacctttga |
104 |
Q |
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| T |
5936155 |
cacctttgtatggaattttctcatcagaagcacatctcatgaacttttccaatctagatagcgaggatttaacccatttaacaacatgacgaatctttga |
5936056 |
T |
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| Q |
105 |
aatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatccccatttaggacgtga |
204 |
Q |
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| T |
5936055 |
aatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatccccatttaggacgtga |
5935956 |
T |
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| Q |
205 |
ttgtcccaagaactc |
219 |
Q |
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| T |
5935955 |
ttgtcccaagaactc |
5935941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 5933309 - 5933523
Alignment:
| Q |
5 |
cacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacatcatgacgaacctttga |
104 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| |
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| T |
5933309 |
cacctttgtatggaattttctcatcagaagcacatctcataaacttttccaatctagatggcgaggatttaacccatttaacagcatgacgaatctttga |
5933408 |
T |
|
| Q |
105 |
aatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatccccatttaggacgtga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5933409 |
aatagacccttgtttatcctccttcaagccagatttcacaataaggtttactacatgtgtgcaacaccgcatgtgaacataatccccatttaggacgtga |
5933508 |
T |
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| Q |
205 |
ttgtcccaagaactc |
219 |
Q |
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| T |
5933509 |
ttgtcccaataactc |
5933523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 29090450 - 29090236
Alignment:
| Q |
5 |
cacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacatcatgacgaacctttga |
104 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
29090450 |
cacctttttatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacagcatgacgaatctttga |
29090351 |
T |
|
| Q |
105 |
aatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatccccatttaggacgtga |
204 |
Q |
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| T |
29090350 |
aatagacccttgtttatcctccctcaagccagatttcacaataaggtttaatacatgcgtgcaacaccacatgtgaacataatccccatttaggacgtga |
29090251 |
T |
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| Q |
205 |
ttgtcccaagaactc |
219 |
Q |
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||||||||||||||| |
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| T |
29090250 |
ttgtcccaagaactc |
29090236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 16046359 - 16046145
Alignment:
| Q |
5 |
cacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacatcatgacgaacctttga |
104 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
16046359 |
cacctttgtatgaaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaactgcatgacgaatctttga |
16046260 |
T |
|
| Q |
105 |
aatagacccttgtttatcctccttcaagccagatttcacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatccccatttaggacgtga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16046259 |
aatagacccttgtttatcctccttcaagccagattttacaataaggtttaatacatgcgtgcaacaccgcatgtgaacataatccccatttaggacgtga |
16046160 |
T |
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| Q |
205 |
ttgtcccaagaactc |
219 |
Q |
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||||||||||||||| |
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| T |
16046159 |
ttgtcccaagaactc |
16046145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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