View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_5 (Length: 406)
Name: NF8839_low_5
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 393
Target Start/End: Complemental strand, 9232104 - 9231716
Alignment:
| Q |
5 |
gagaacagagttaatgatggaccgttttcgttgcaatctaattcataccttgtgtttccacagtggcctggatcggttttgagacgaaaaggatatgtta |
104 |
Q |
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| T |
9232104 |
gagaacatggttaatgatggaccgtttttgttgcaatctaattcgtaccttgtgtctccgcagtgatttggatcggttttgagacgaaatggatatgtta |
9232005 |
T |
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| Q |
105 |
tgttgcgaattttgccgcaagatgaagttggacatggttggtgattcttagctagacaattttgatggaataggataaaaattgaagcaaatatttttac |
204 |
Q |
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| T |
9232004 |
tgttgcgaattttgccgcaagatgaagttggacatggttggtgatgcttagctagacaattttgatggaataggataaaaattgaagcaaatatttttac |
9231905 |
T |
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| Q |
205 |
caatgtttgtagttgtacaaatgatgaacaagaaaatcgagcttgtcttttcatcattcaagtcttcnnnnnnntatgaaattttttaaaacaagccctc |
304 |
Q |
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| T |
9231904 |
caatgtttgtagttgtacaaatgatgaacaagaaaattgagcttgtcttttcatcattcaagtcttcaaaaaaatatgaaattttttaaaacaagccctc |
9231805 |
T |
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| Q |
305 |
atgagaaaatgttgtgattggtttatgtttttaaattttataaatgggtcaatcatttatcattaggttgccaccatatctagctgtct |
393 |
Q |
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| T |
9231804 |
atgagaaaatgttgtgattggtttatgttttttaattttataaatgggtcaatcatttatcattaggttgccaccatatctagctgtct |
9231716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 9386541 - 9386733
Alignment:
| Q |
5 |
gagaacagagttaatgatggaccgttttcgttgcaatctaattcataccttgtgtttccacagtggcctggatcggttttgagacgaaaaggatatgtta |
104 |
Q |
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| T |
9386541 |
gagaacatggttaatgatggaccattttcgttgcaatctaattcataccttttgtccccacagtggtttggatcagttttgagacgaaatgggtatgtta |
9386640 |
T |
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| Q |
105 |
tgttgcgaattttgccgcaagatgaagttggacatggttggtgattcttagctagacaattttgatggaataggataaaaattgaagcaaata |
197 |
Q |
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| T |
9386641 |
tgttggtgattttgccgcatgatgacgttgggcatggttggtgatgcttagcaagacaattttgatgagaaatgagaagaattgaagcaaata |
9386733 |
T |
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