View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8839_low_7 (Length: 377)
Name: NF8839_low_7
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 12043617 - 12043822
Alignment:
| Q |
10 |
tggacatcaagcaaatttgcaaaaacagatgaaggaaagcaaattgaaaaagtggttatggatagagttttggaaagatatcgttatttcttgtcaaggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12043617 |
tggacatcaagcaaatttgcaaaaacagatgaaggaaagcaaattgaaaaagtggttatggatagagttttggaaagatatcgttatttcttgtcaaggt |
12043716 |
T |
|
| Q |
110 |
acttatccaataattaaatgtgaagatttggaaggaggaactcagaatgaaggagataatggagttgcagctgatcaga--atgtcttgaatgacttatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12043717 |
gcttatccaataattaaatgtgaagatttggaaggaggaacttagaatgaaggagataatggagttgcagctgatcagaatatgtcttgaatgacttatt |
12043816 |
T |
|
| Q |
208 |
gaatta |
213 |
Q |
| |
|
|||||| |
|
|
| T |
12043817 |
gaatta |
12043822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 12043897 - 12043971
Alignment:
| Q |
289 |
agacaattccaatgatgattaatgaaagtgtttttgatgaaaggtgatttttctagttacttttaatttctgatg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12043897 |
agacaattccaatgatgattaatgaaagtgtttttgatgaaaggtgatttttctagttacttttaatttctgatg |
12043971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 26331943 - 26331899
Alignment:
| Q |
129 |
gtgaagatttggaaggaggaactcagaatgaaggagataatggag |
173 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26331943 |
gtgaagatttggaaggaggaacccaaaatgaaggagataatggag |
26331899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 12141859 - 12141803
Alignment:
| Q |
299 |
aatgatgattaatgaaagtgttt-ttgatgaaaggtgatttttc-tagttactttta |
353 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||| ||||||| |||||||||||| |
|
|
| T |
12141859 |
aatgatgattaatgaaagtttttatttatgaaaggttatttttcttagttactttta |
12141803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University