View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_9 (Length: 322)
Name: NF8839_low_9
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 52340223 - 52340527
Alignment:
| Q |
1 |
tattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccacgacaatgagagaggtatctacc |
100 |
Q |
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| T |
52340223 |
tattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaattgcccatgacaatgagagaggtatctacc |
52340322 |
T |
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| Q |
101 |
tgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttgcaaa |
200 |
Q |
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| T |
52340323 |
tgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttgcaaa |
52340422 |
T |
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| Q |
201 |
taaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccaccaaggaagaagttgttggtggatcccggtgcct |
300 |
Q |
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| T |
52340423 |
taaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccgccaaggaagaagttgttggtggatcccggtgcct |
52340522 |
T |
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| Q |
301 |
tcatg |
305 |
Q |
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||||| |
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| T |
52340523 |
tcatg |
52340527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 297
Target Start/End: Original strand, 52334316 - 52334516
Alignment:
| Q |
97 |
tacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttg |
196 |
Q |
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| T |
52334316 |
tacctgtaacgatgtctctgaagaagggaacggtatccgttaattcatgagcagatctggccttccatttctctgcaagatatggaacagcgatatcctg |
52334415 |
T |
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| Q |
197 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccaccaaggaagaagttgttggtggatcccggt |
296 |
Q |
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| T |
52334416 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttgaatttgaatgcctctctctcctgcaccgccgaggaagaagttgttggtggatccgggt |
52334515 |
T |
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| Q |
297 |
g |
297 |
Q |
| |
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| T |
52334516 |
g |
52334516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 9184416 - 9184664
Alignment:
| Q |
1 |
tattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccacgacaatgagagaggtatctacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |
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| T |
9184416 |
tattttatagtttaatggacatgcatgggtatgatactaatatgtaccatctatgattaaatttataaaaatgcccatgacaattagagaggtatccacc |
9184515 |
T |
|
| Q |
101 |
tgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttgcaaa |
200 |
Q |
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| T |
9184516 |
tgtaacaatgtccaagaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgcggcaagatatggaatagcgatgtcctgcaaa |
9184615 |
T |
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| Q |
201 |
taaacaccaatggcggtgaatttgacgaatttgtcttggatttggatac |
249 |
Q |
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| T |
9184616 |
taaacaccaatggcggtgaatttgacgaatttgtcttggatttggatac |
9184664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 286
Target Start/End: Original strand, 9180917 - 9181106
Alignment:
| Q |
97 |
tacctgtaacaatgtccatgaagaagggaacggattctgttaacttgtgaggaggtttacccttccatttcgccgcaagatatggaatagcgatgtcttg |
196 |
Q |
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|||||||||| ||||| ||||||||||||||| || ||||| | |||| || ||| ||||||||||| | ||||||||||||| |||||| || || |
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| T |
9180917 |
tacctgtaacgatgtctctgaagaagggaacggtatccgttaattcatgagcagatttggccttccatttctctgcaagatatggaacagcgatatcctg |
9181016 |
T |
|
| Q |
197 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctcacccctgcgccaccaaggaagaagttgttggt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
9181017 |
caaataaacaccaatggcggtgaatttgacgaatttgtcttggatttggatacctctagcccctgtgccgccaaggaagaagttgttggt |
9181106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 9190295 - 9190355
Alignment:
| Q |
245 |
gatacctctcacccctgcgccaccaaggaagaagttgttggtggatcccggtgccttcatg |
305 |
Q |
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| T |
9190295 |
gatacctctcacccctgcgctgccaaggaagaagttgttggtggatctcggtgccttcatg |
9190355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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