View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8840_1 (Length: 583)

Name: NF8840_1
Description: NF8840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8840_1
NF8840_1
[»] chr1 (23 HSPs)
chr1 (7-583)||(25679475-25680038)
chr1 (22-129)||(19865276-19865383)
chr1 (21-129)||(50092297-50092405)
chr1 (20-129)||(12161846-12161955)
chr1 (21-129)||(8940993-8941101)
chr1 (21-129)||(9109974-9110082)
chr1 (22-129)||(6412053-6412160)
chr1 (21-76)||(20408159-20408214)
chr1 (22-129)||(23457929-23458036)
chr1 (22-129)||(41120737-41120844)
chr1 (22-76)||(46339445-46339499)
chr1 (20-76)||(18890547-18890603)
chr1 (25-129)||(46785961-46786065)
chr1 (22-129)||(4340439-4340546)
chr1 (29-76)||(9464188-9464235)
chr1 (21-76)||(17661135-17661190)
chr1 (22-76)||(28229455-28229509)
chr1 (22-76)||(46790085-46790139)
chr1 (20-129)||(12720841-12720950)
chr1 (22-159)||(19081730-19081867)
chr1 (22-159)||(19129618-19129755)
chr1 (28-76)||(20290327-20290374)
chr1 (21-61)||(48522618-48522658)
[»] chr3 (24 HSPs)
chr3 (21-159)||(18380022-18380160)
chr3 (22-159)||(19269864-19270001)
chr3 (20-129)||(29236072-29236181)
chr3 (22-129)||(13921353-13921460)
chr3 (22-129)||(25882598-25882705)
chr3 (21-76)||(29956453-29956508)
chr3 (21-76)||(30005608-30005663)
chr3 (22-159)||(1310959-1311096)
chr3 (20-129)||(19223477-19223586)
chr3 (20-129)||(48404888-48404997)
chr3 (21-129)||(3461309-3461417)
chr3 (21-129)||(8428199-8428307)
chr3 (29-129)||(8546273-8546373)
chr3 (21-129)||(26098841-26098949)
chr3 (22-129)||(26390634-26390741)
chr3 (21-76)||(27449169-27449224)
chr3 (22-129)||(43329763-43329870)
chr3 (18-76)||(7623527-7623585)
chr3 (22-76)||(21816802-21816856)
chr3 (21-79)||(36543827-36543885)
chr3 (20-129)||(5260965-5261074)
chr3 (35-76)||(28859672-28859713)
chr3 (99-159)||(27212858-27212918)
chr3 (21-77)||(36564438-36564494)
[»] chr4 (17 HSPs)
chr4 (22-159)||(5473849-5473986)
chr4 (18-156)||(19839182-19839320)
chr4 (22-159)||(45532579-45532716)
chr4 (22-129)||(4586758-4586865)
chr4 (21-129)||(7111945-7112053)
chr4 (22-129)||(25026587-25026694)
chr4 (23-151)||(4627079-4627207)
chr4 (20-76)||(54539369-54539425)
chr4 (21-76)||(9670478-9670533)
chr4 (21-76)||(12106065-12106120)
chr4 (22-129)||(13028816-13028923)
chr4 (51-129)||(18744099-18744177)
chr4 (22-76)||(22168351-22168405)
chr4 (22-159)||(32175737-32175874)
chr4 (22-158)||(9913259-9913395)
chr4 (28-76)||(37378629-37378677)
chr4 (20-76)||(45091344-45091400)
[»] chr7 (18 HSPs)
chr7 (20-159)||(23750734-23750873)
chr7 (21-129)||(27806050-27806158)
chr7 (19-159)||(22486396-22486536)
chr7 (31-159)||(26415426-26415554)
chr7 (21-76)||(31425510-31425565)
chr7 (22-76)||(48933221-48933275)
chr7 (19-76)||(3872184-3872241)
chr7 (99-159)||(816268-816328)
chr7 (20-76)||(18217914-18217970)
chr7 (22-129)||(42926419-42926527)
chr7 (22-129)||(3904478-3904585)
chr7 (22-129)||(20923958-20924065)
chr7 (21-76)||(23539317-23539372)
chr7 (22-129)||(23699825-23699932)
chr7 (22-129)||(28800910-28801017)
chr7 (22-76)||(47523650-47523704)
chr7 (19-76)||(6849208-6849265)
chr7 (20-76)||(23232124-23232180)
[»] scaffold0009 (2 HSPs)
scaffold0009 (23-137)||(182554-182668)
scaffold0009 (22-129)||(219668-219775)
[»] chr2 (13 HSPs)
chr2 (21-159)||(41736170-41736308)
chr2 (21-129)||(18551252-18551360)
chr2 (28-105)||(12860235-12860312)
chr2 (28-129)||(28262392-28262493)
chr2 (22-129)||(14757121-14757228)
chr2 (22-129)||(43408511-43408618)
chr2 (21-76)||(44476374-44476429)
chr2 (22-76)||(12779681-12779735)
chr2 (22-76)||(20065074-20065128)
chr2 (22-76)||(37552308-37552362)
chr2 (22-159)||(2556093-2556230)
chr2 (21-129)||(21293710-21293818)
chr2 (22-70)||(32009040-32009088)
[»] chr6 (17 HSPs)
chr6 (21-129)||(20182177-20182285)
chr6 (21-129)||(22153706-22153814)
chr6 (21-129)||(26224460-26224568)
chr6 (22-129)||(15448417-15448524)
chr6 (21-159)||(9892965-9893103)
chr6 (22-76)||(22579349-22579403)
chr6 (28-129)||(5192195-5192296)
chr6 (20-129)||(6598496-6598605)
chr6 (21-76)||(6605495-6605550)
chr6 (28-159)||(25398004-25398135)
chr6 (22-137)||(28668124-28668239)
chr6 (22-129)||(30833960-30834067)
chr6 (22-76)||(12160847-12160901)
chr6 (22-76)||(24661009-24661063)
chr6 (22-76)||(28364996-28365050)
chr6 (20-76)||(495625-495681)
chr6 (28-76)||(18492454-18492502)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-129)||(439995-440102)
[»] chr8 (24 HSPs)
chr8 (20-159)||(6817054-6817193)
chr8 (22-159)||(3823133-3823270)
chr8 (20-76)||(16061937-16061993)
chr8 (21-129)||(17810328-17810436)
chr8 (16-76)||(25274680-25274740)
chr8 (21-129)||(27910763-27910871)
chr8 (21-129)||(27957182-27957290)
chr8 (22-76)||(42700657-42700711)
chr8 (19-76)||(24193193-24193250)
chr8 (17-129)||(22939343-22939455)
chr8 (22-74)||(40289421-40289473)
chr8 (21-76)||(8555303-8555358)
chr8 (22-129)||(23752286-23752393)
chr8 (32-159)||(31344182-31344309)
chr8 (22-76)||(4331061-4331115)
chr8 (22-76)||(19240950-19241004)
chr8 (22-76)||(19314134-19314188)
chr8 (22-76)||(19488061-19488115)
chr8 (22-76)||(24576024-24576078)
chr8 (22-76)||(25000431-25000485)
chr8 (22-76)||(27869321-27869375)
chr8 (29-77)||(14304311-14304359)
chr8 (29-129)||(18010067-18010167)
chr8 (22-129)||(24636682-24636790)
[»] chr5 (17 HSPs)
chr5 (22-76)||(28265475-28265529)
chr5 (22-159)||(12045729-12045866)
chr5 (22-129)||(618326-618433)
chr5 (21-76)||(4125187-4125242)
chr5 (22-129)||(16631874-16631981)
chr5 (22-129)||(24138841-24138948)
chr5 (22-159)||(23408982-23409120)
chr5 (20-158)||(25652581-25652719)
chr5 (22-159)||(7888799-7888936)
chr5 (22-129)||(16121839-16121946)
chr5 (22-129)||(17039631-17039738)
chr5 (21-76)||(38837670-38837725)
chr5 (22-128)||(23974576-23974682)
chr5 (22-76)||(36196479-36196533)
chr5 (22-159)||(20959510-20959647)
chr5 (22-71)||(35620344-35620393)
chr5 (99-159)||(27428089-27428149)
[»] scaffold0007 (2 HSPs)
scaffold0007 (22-129)||(3774-3881)
scaffold0007 (21-159)||(202776-202914)
[»] scaffold0001 (3 HSPs)
scaffold0001 (22-159)||(84305-84442)
scaffold0001 (28-129)||(8116-8217)
scaffold0001 (28-129)||(21848-21949)
[»] scaffold0184 (1 HSPs)
scaffold0184 (28-76)||(7541-7589)
[»] scaffold0019 (1 HSPs)
scaffold0019 (21-76)||(173531-173585)
[»] scaffold0076 (1 HSPs)
scaffold0076 (22-76)||(26568-26622)
[»] scaffold0062 (1 HSPs)
scaffold0062 (22-76)||(44002-44056)
[»] scaffold0023 (1 HSPs)
scaffold0023 (22-76)||(39703-39757)
[»] scaffold0014 (1 HSPs)
scaffold0014 (19-129)||(22243-22353)
[»] scaffold0128 (1 HSPs)
scaffold0128 (28-76)||(10669-10717)
[»] scaffold0024 (1 HSPs)
scaffold0024 (99-159)||(112330-112390)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 583
Target Start/End: Complemental strand, 25680038 - 25679475
Alignment:
Q  7 attcaagaccattttca---ctattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaat 103  Q
    |||||||||||||||||   |||||| |||||| |||||||| |||||||||||||||||| |||||||||||||  ||||||||||||| |||||| ||    
T  25680038 attcaagaccattttcagtactattaaaaaaagcaaaattagagacgaaaattagtgaggg-aaaaatgaaatcttaaactaatttctttgtcataatat 25679940  T
Q  104 ttgttgacggaattaaagagggatttaacaatttgcatctctaaattttcctcactgnnnnnnnnagtagtgtttgcttgtgcatgttagatgatgtcga 203  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||          
T  25679939 ttgttgacagaattaaagagggatttaacaatttgcatctctaaattttcctcactgtttcttttagtagtgtttgcttgtgcatgttagatga------ 25679846  T
Q  204 gtgagatgaagtcatgcctaaaaagctgttttggatttttcctatctctggtgtgaggcatctaggatggtctaccaagcggctcacacaagggtgacat 303  Q
             ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25679845 ---------agtcatgcctaaaaaaccgttttggatttttcctatctctggtgtgaggcatctaggatggtctaccaagcggctcacacaagggtgacat 25679755  T
Q  304 cttgctctcgaagtttattgggtgtgaggcgtctcatgtcaacttagggatgagaatagaccagtcctacaaggggcctacaacctagcctatgacagat 403  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25679754 cttgctctcgaagtttattggttgtgagtcgtctcatgtcaactcagggatgagaatagaccagtcctacaaggggcctacaacctagcctatgacagat 25679655  T
Q  404 cagactttttcttaactgagaaggtttatgcttttttggatatcattgacttatttgttcgttagtttatttaaacttatgaaataaagttttacaaagg 503  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  25679654 tagactttttcttaactgagaaggtttatacttttttggatatcattgacttatttgttcgttagtttatttaaaattatgaaataaagttttaaaaagg 25679555  T
Q  504 ctacaagatcataacagactttcaaaaagtcagtcttggacctaaacagtaagcttttgacaggtcgcagaccatactta 583  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  25679554 ctacaagatcataacagattttcaaaaagtcaatcttggacctaaacagtaagcttttgacaggtcgcagaccagactta 25679475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 19865383 - 19865276
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||||||||||||||| |||||||||||| || ||||||||||| ||  || |||| |||  ||  |||||||  ||||||||||| ||    
T  19865383 cactactagaaaaagtaaaattagcgaggaaaattagtgacggaaaaaatgaaatttctcacaaattccttggtcgcaaaatttagtgacggaattagag 19865284  T
Q  122 agggattt 129  Q
    ||||||||    
T  19865283 agggattt 19865276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 50092297 - 50092405
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||||| | |||| |||||||  ||||||||||| |    
T  50092297 tcactactagaaaaagaaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcatgatcacaaaatttagtgacggaattaga 50092396  T
Q  121 gagggattt 129  Q
    |||||||||    
T  50092397 gagggattt 50092405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 12161955 - 12161846
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||||||||||||||| |||||||| ||| || |||||||||||  |  || |||||| |  ||  |||||||  |||||||||||     
T  12161955 ttcactactagaaaaagtaaaattagcgaggaaaattattgacggaaaaaatgaaattcctcacaaatttcatggtcgcaaaatttagtgacggaattag 12161856  T
Q  120 agagggattt 129  Q
    ||||||||||    
T  12161855 agagggattt 12161846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 8940993 - 8941101
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || ||||||||||| ||  || |||| ||| ||| ||||||||   |||||||||| |    
T  8940993 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaaattccttgatcgtaaaatttagcgacggaattaga 8941092  T
Q  121 gagggattt 129  Q
    |||| ||||    
T  8941093 gaggaattt 8941101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 9109974 - 9110082
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||| |    
T  9109974 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcttggtcgcaaaatttagtgacggaattaga 9110073  T
Q  121 gagggattt 129  Q
    |||||||||    
T  9110074 gagggattt 9110082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 6412053 - 6412160
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||| | || |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||||||    
T  6412053 cactactagaaaaagcaaaattagcgagggaaattagtaacggaaaaaatgaaattcctcacaaatttcttggtcgcaaaatttagtgacggaattaaag 6412152  T
Q  122 agggattt 129  Q
    ||||||||    
T  6412153 agggattt 6412160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 20408159 - 20408214
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| |||||||||||| || |||||||||||    
T  20408159 tcactactagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaat 20408214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 23458036 - 23457929
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||||||||||||||| |||||||| ||| || |||||||||||  |  || |||||| |  ||  |||||||  ||||||||||| ||    
T  23458036 cactactagaaaaagtaaaattagcgaggaaaattattgacggaaaaaatgaaattcctcacaaatttcatggtcgcaaaatttagtgacggaattagag 23457937  T
Q  122 agggattt 129  Q
    ||||||||    
T  23457936 agggattt 23457929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 41120737 - 41120844
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||| ||    
T  41120737 cactaatagaaaaagcaaaattagcgagggaaattagtgatggaaaaaatgaaattcctcacaaatttcttggtcgcaaaatttagtgacggaattagag 41120836  T
Q  122 agggattt 129  Q
    ||||||||    
T  41120837 agggattt 41120844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 46339445 - 46339499
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| |||||||||||| || |||||||||||    
T  46339445 cactactagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaat 46339499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 18890547 - 18890603
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||| |||||||| ||||||||||| | |||||||||| || |||||||||||    
T  18890547 ttcactatcagaaaaagcaaaattagcgagggaaattagtgatggaaaaaatgaaat 18890603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 46785961 - 46786065
Alignment:
Q  25 tattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagg 124  Q
    |||||||||||| ||||||||||| | |||||||||| || ||||||||||| ||  || | || |||  ||  |||||||  ||||||||||| |||||    
T  46785961 tattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaagttccttggtcgcaaaatttaatgacggaattagagagg 46786060  T
Q  125 gattt 129  Q
    |||||    
T  46786061 gattt 46786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 4340546 - 4340439
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||||| | | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| ||    
T  4340546 cactattagaaaaagcaaaattagcaagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattagag 4340447  T
Q  122 agggattt 129  Q
    ||||||||    
T  4340446 agggattt 4340439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 9464235 - 9464188
Alignment:
Q  29 agaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||||||||||| |||| |||||||||| || |||||||||||    
T  9464235 agaaaaagtaaaattagtgacggaaattagtgacggaaaaaatgaaat 9464188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 17661190 - 17661135
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||||||||||| ||||||| ||||| |||||||||| || |||||| ||||    
T  17661190 tcactattagaaaaagcaaaattaacgacggaaattagtgacggaaaaaataaaat 17661135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 28229455 - 28229509
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  28229455 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 28229509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 46790139 - 46790085
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  46790139 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 46790085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 12720950 - 12720841
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||| ||||||||||| | |||||||||| || |||||| ||||  |  || |||| |||  ||  |||||||  |||||||||||     
T  12720950 ttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaataaaattcctcacaaattccttggtcgcaaaatttagtgacggaattag 12720851  T
Q  120 agagggattt 129  Q
    ||||||||||    
T  12720850 agagggattt 12720841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 19081867 - 19081730
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| || ||||||||||||||| || | |||||||||| || |||||| |||| ||  || |||| |||  || ||||||||  |||| |||||| ||    
T  19081867 cactactaaaaaaagtaaaattagagagggaaattagtgatggaaaaaataaaatttctcacaaattccttggtcgtaaaatttagtgacagaattagag 19081768  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | |||||||| || |||||||    
T  19081767 agggatttcacgttttccctctctaaaattccctcact 19081730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 19129755 - 19129618
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| || ||||||||||||||| || | |||||||||| || |||||| |||| ||  || |||| |||  || ||||||||  |||| |||||| ||    
T  19129755 cactactaaaaaaagtaaaattagagagggaaattagtgatggaaaaaataaaatttctcacaaattccttggtcgtaaaatttagtgacagaattagag 19129656  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | |||||||| || |||||||    
T  19129655 agggatttcacgttttccctctctaaaattccctcact 19129618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 20290327 - 20290374
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||||||||||||||| | ||||||||||  |||||||||||||    
T  20290327 tagaaaaagtaaaattagcgagggaaattagtga-cggaaaaatgaaat 20290374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 48522658 - 48522618
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtga 61  Q
    |||||| ||||||||| ||||||||||| ||||||||||||    
T  48522658 tcactactagaaaaagcaaaattagcgaggaaaattagtga 48522618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 18380160 - 18380022
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaa-tctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    |||||| ||||||||||||||||||||| | |||| ||||| || |||||||||| ||| | || |||||||| ||| ||||||||  ||||||||||||    
T  18380160 tcactactagaaaaagtaaaattagcgagggaaatcagtgacggaaaaaatgaaattcttc-acaaatttcttgatcgtaaaatttagtgacggaattaa 18380062  T
Q  120 agagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||||| ||| ||| | ||  ||||||| |||||||    
T  18380061 agagggattttacattttccctcattaaatttccctcact 18380022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 19269864 - 19270001
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||||||    
T  19269864 cactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattaaag 19269963  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | || |||||||| |||||||    
T  19269964 agggattttacgttttccctcactaaatttccctcact 19270001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 29236181 - 29236072
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||||||||||||| ||||||||||| | |||||||||| || ||||||||||| ||  || || |||||  ||  |||||||  |||||||||||     
T  29236181 ttcactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaaaattcttggtcgcaaaatttagtgacggaattag 29236082  T
Q  120 agagggattt 129  Q
    ||||||||||    
T  29236081 agagggattt 29236072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 13921460 - 13921353
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| |||||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| ||    
T  13921460 cactactagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattagag 13921361  T
Q  122 agggattt 129  Q
    ||||||||    
T  13921360 agggattt 13921353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 25882705 - 25882598
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || ||||  ||  || ||||||||  ||||||||||| ||    
T  25882705 cactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattctttggtcgtaaaatttagtgacggaattagag 25882606  T
Q  122 agggattt 129  Q
    ||||||||    
T  25882605 agggattt 25882598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 29956508 - 29956453
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||||||||||||||| | |||||||||| || |||||||||||    
T  29956508 tcactactagaaaaagtaaaattagcgagggaaattagtgatggaaaaaatgaaat 29956453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 30005663 - 30005608
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||||||||||||||| | |||||||||| || |||||||||||    
T  30005663 tcactactagaaaaagtaaaattagcgagggaaattagtgatggaaaaaatgaaat 30005608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 1310959 - 1311096
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||| | |||||||||||| || ||||||||||   |  || |||| |||  ||  |||||||  ||||||||||| ||    
T  1310959 cactactagaaaaagcaaaattagcaaggaaaattagtgacggaaaaaatgaaaatcctcacaaattccttggtcgcaaaatttagtgacggaattagag 1311058  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| |||| |||||||| |||||||    
T  1311059 agggattttacgttttccatcactaaatttccctcact 1311096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 19223586 - 19223477
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||| ||||||||||| | ||||| |||| || |||||||||||  |  || |||| |||  || ||||||||  |||||||||||     
T  19223586 ttcactactagaaaaagcaaaattagcgagggaaattggtgacggaaaaaatgaaattcctcacaaattccttggtcgtaaaatttagtgacggaattag 19223487  T
Q  120 agagggattt 129  Q
    ||||||||||    
T  19223486 agagggattt 19223477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 48404997 - 48404888
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  |||||||||||     
T  48404997 ttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattag 48404898  T
Q  120 agagggattt 129  Q
    ||||||||||    
T  48404897 agagggattt 48404888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 3461309 - 3461417
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | ||||||||||  | |||||| ||||  |  || |||||||| |||  |||||||  ||||||||||| |    
T  3461309 tcactactagaaaaagcaaaattagcgaaggaaattagtgacagaaaaaataaaattcctcacaaatttcttgatcgcaaaatttaatgacggaattaga 3461408  T
Q  121 gagggattt 129  Q
    |||||||||    
T  3461409 gagggattt 3461417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 8428307 - 8428199
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| |||||||| |||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  || ||||||||  ||||||||||| |    
T  8428307 tcactactagaaaaaataaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgtaaaatttagtgacggaattaga 8428208  T
Q  121 gagggattt 129  Q
    ||| |||||    
T  8428207 gagagattt 8428199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 8546373 - 8546273
Alignment:
Q  29 agaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggatt 128  Q
    |||||||| ||||||||||| |||||||||||| || |||||||||||  |  || |||| | | |||  |||||||  ||||||||||| |||||||||    
T  8546373 agaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaattcctcacaaattccatgatcgcaaaatttagtgacggaattagagagggatt 8546274  T
Q  129 t 129  Q
    |    
T  8546273 t 8546273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 26098949 - 26098841
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| |    
T  26098949 tcactactagaaaaagcaaaattagcgagggaaattagtgatggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattaga 26098850  T
Q  121 gagggattt 129  Q
    |||||||||    
T  26098849 gagggattt 26098841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 26390634 - 26390741
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| |||||||||||   |||||||||| || |||||||||||  |  || |||| |||  ||| |||||||  ||||||||||| ||    
T  26390634 cactactagaaaaagcaaaattagcgagagaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcacaaaatttagtgacggaattagag 26390733  T
Q  122 agggattt 129  Q
    ||||||||    
T  26390734 agggattt 26390741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 27449224 - 27449169
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  27449224 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 27449169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 43329763 - 43329870
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  || ||||||||  ||||||||||| ||    
T  43329763 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgtaaaatttagtgacggaattagag 43329862  T
Q  122 agggattt 129  Q
    | ||||||    
T  43329863 aaggattt 43329870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 7623527 - 7623585
Alignment:
Q  18 ttttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||| ||||||||| ||||| ||||| | |||||||||| || |||||||||||    
T  7623527 ttttcactactagaaaaagaaaaatcagcgagggaaattagtgacggaaaaaatgaaat 7623585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 21816856 - 21816802
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  21816856 cactactagaaaaagaaaaattagcgagggaaattagtgacggaaaaaatgaaat 21816802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 36543885 - 36543827
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctc 79  Q
    |||||| ||||||||| |||||||| || |||||||||||| || |||||| |||||||    
T  36543885 tcactactagaaaaagaaaaattagggaggaaaattagtgatggaaaaaataaaatctc 36543827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 5261074 - 5260965
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||| |||||||| || | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  |||||||||||     
T  5261074 ttcactactagaaaaagcaaaattagtgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattag 5260975  T
Q  120 agagggattt 129  Q
    ||||||||||    
T  5260974 agagggattt 5260965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 28859713 - 28859672
Alignment:
Q  35 agtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||||||||| |||||||||||| || |||||||||||    
T  28859713 agtaaaattagcgaggaaaattagtgacggaaaaaatgaaat 28859672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 27212858 - 27212918
Alignment:
Q  99 aaaatttgttgacggaattaaagagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||  |||||||||||||||||||||| ||  ||| | ||||||||||| |||||||    
T  27212858 aaaatttagtgacggaattaaagagggatttcacgtttttcctctctaaatttccctcact 27212918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 36564438 - 36564494
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatc 77  Q
    |||||| ||||||||| |||||||| || |||||||||||| || |||||| |||||    
T  36564438 tcactactagaaaaagaaaaattagggaggaaaattagtgatggaaaaaataaaatc 36564494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 5473986 - 5473849
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| ||||||||||||||  |  || |||| |||  ||  |||||||  ||||||||||||||    
T  5473986 cactactagaaaaagcaaaattagcgagggaaattagtgacgggaaaaatgaaattcctcaccaattccttggtcgcaaaatttagtgacggaattaaag 5473887  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | || ||||||||||||||||    
T  5473886 agggattttacgttttccctcactaaattttcctcact 5473849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 19839320 - 19839182
Alignment:
Q  18 ttttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaatt 117  Q
    ||||||||| ||||||||| ||||||||||| | |||||||||| || ||||||||||| ||  || |||| |||  ||  |||||||  ||||||||||    
T  19839320 ttttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaaattccttggtcgcaaaatttagtgacggaatt 19839221  T
Q  118 aaagagggatttaacaatttgcatctctaaattttcctc 156  Q
    | |||||||||| ||  ||| | || |||||||||||||    
T  19839220 agagagggattttacgttttccctcactaaattttcctc 19839182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 45532579 - 45532716
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||| ||| | |||||||||| || |||||||||||  |  || |||||||| |||  |||||||  ||||||||||| ||    
T  45532579 cactattagaaaaagcaaaattaacgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcttgatcgcaaaatttaatgacggaattagag 45532678  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | || |||||||| |||||||    
T  45532679 agggattttacgttttccctcactaaatttccctcact 45532716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 4586758 - 4586865
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| ||| ||| ||||||||  ||||||||||| ||    
T  4586758 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttgatcgtaaaatttagtgacggaattagag 4586857  T
Q  122 agggattt 129  Q
    ||||||||    
T  4586858 agggattt 4586865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 7111945 - 7112053
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||| |    
T  7111945 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcttggtcgaaaaatttagtgacggaattata 7112044  T
Q  121 gagggattt 129  Q
    |||||||||    
T  7112045 gagggattt 7112053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 25026694 - 25026587
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    |||||||||||||||||||||||| || | |||||||||| || ||||||||||| ||  || |||| |||  ||  |||||||  ||||||||||| ||    
T  25026694 cactattagaaaaagtaaaattagtgagggaaattagtgacggaaaaaatgaaatttctcacaaattccttagtcgcaaaatttagtgacggaattagag 25026595  T
Q  122 agggattt 129  Q
    || |||||    
T  25026594 agagattt 25026587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 4627079 - 4627207
Alignment:
Q  23 actattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaaga 122  Q
    |||| ||||||||| ||||||||||| | |||||| ||| || |||||||||||  |  || |||||||| ||| ||||||||  ||||| ||||| |||    
T  4627079 actactagaaaaagcaaaattagcgagggaaattaatgacggaaaaaatgaaattcctcacaaatttcttgatcgtaaaatttagtgacgaaattagaga 4627178  T
Q  123 gggatttaacaatttgcatctctaaattt 151  Q
    | ||||| ||| ||| | || ||||||||    
T  4627179 gagattttacattttccctcactaaattt 4627207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 54539425 - 54539369
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||| ||||||||| ||||||||| | |||||||||||| || |||||||||||    
T  54539425 ttcactactagaaaaagcaaaattagcaaggaaaattagtgacggaaaaaatgaaat 54539369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 9670478 - 9670533
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  9670478 tcactactagaaaaagaaaaattagcgagggaaattagtgacggaaaaaatgaaat 9670533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 12106120 - 12106065
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||||||||||||||||||||||| | |||||| ||| || |||||| ||||    
T  12106120 tcactattagaaaaagtaaaattagcgagggaaattattgatggaaaaaataaaat 12106065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 13028816 - 13028923
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||| ||||||| |||||||||||| || ||||||| |||  |  || ||||||||  ||  |||||||  ||||||||||| ||    
T  13028816 cactactagaaaaagcaaacttagcgaggaaaattagtgacggaaaaaatgcaattcctcacaaatttcttggtcgcaaaatttagtgacggaattagag 13028915  T
Q  122 agggattt 129  Q
    ||||||||    
T  13028916 agggattt 13028923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 18744099 - 18744177
Alignment:
Q  51 aaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggattt 129  Q
    ||||||||||| || ||||||||||| ||  || |||||| |  |||||||||||  ||||||||||| ||||||||||    
T  18744099 aaaattagtgacggaaaaaatgaaatttctcacaaatttcatggtcataaaatttagtgacggaattagagagggattt 18744177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 22168405 - 22168351
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  22168405 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 22168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 32175737 - 32175874
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||| ||| | |||||||||| || |||||| ||||  |  || ||||||||  ||  |||||||  ||||||||||| ||    
T  32175737 cactactagaaaaagcaaaattaacgagggaaattagtgacggaaaaaataaaattcctcacaaatttcttggtcgcaaaatttagtgacggaattagag 32175836  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | || |||||||| |||||||    
T  32175837 agggattttacgttttccctcactaaatttccctcact 32175874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 9913395 - 9913259
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| |||||||| ||||||||| || |||||||||||| || |||||| ||||| |  || | ||||||  ||  |||||||  |||| |||||| ||    
T  9913395 cactactagaaaaattaaaattagggaggaaaattagtgacggaaaaaattaaatccctcacaattttcttggtcgcaaaatttagtgacagaattagag 9913296  T
Q  122 agggatttaacaatttgcatctctaaattttcctcac 158  Q
    |||||||| ||  ||| | |||||||| || ||||||    
T  9913295 agggatttcacgttttccctctctaaaattccctcac 9913259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 37378629 - 37378677
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||| ||||||||||| |||||||| ||| || |||||||||||    
T  37378629 tagaaaaagcaaaattagcgaggaaaattattgacggaaaaaatgaaat 37378677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 45091400 - 45091344
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||| ||||||||  ||||||||||| | |||||||||| || |||||||||||    
T  45091400 ttcactactagaaaaaacaaaattagcgagggaaattagtgacggaaaaaatgaaat 45091344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 23750734 - 23750873
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||  ||||||||||| | |||||||||| || ||||||||||| ||  || |||| |||  || ||||||||  |||||||||||     
T  23750734 ttcactactagaaaaaacaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaaattccttggtcgtaaaatttagtgacggaattag 23750833  T
Q  120 agagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||||| ||| ||| | || |||||||| |||||||    
T  23750834 agagggattttacattttccctcactaaatttccctcact 23750873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 27806158 - 27806050
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| |||||||||||| || |||||||||||  |  || |||| |||  || ||||||||  ||||||||||| |    
T  27806158 tcactactagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgtaaaatttagtgacggaattaga 27806059  T
Q  121 gagggattt 129  Q
    |||||||||    
T  27806058 gagggattt 27806050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 22486536 - 22486396
Alignment:
Q  19 tttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaatta 118  Q
    |||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  |||||||||||    
T  22486536 tttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaatta 22486437  T
Q  119 aagagggatttaacaatttgcatctctaaattttcctcact 159  Q
     |||||||||| ||  ||| | || |||||||| |||||||    
T  22486436 gagagggatttcacgttttccgtcactaaatttccctcact 22486396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 26415554 - 26415426
Alignment:
Q  31 aaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggattta 130  Q
    ||||||||||||||| || | |||||||||| || |||||| |||| ||  || ||||| || ||| ||||||||  ||||| ||||||||||||||||     
T  26415554 aaaaagtaaaattagagaaggaaattagtgatggaaaaaataaaatttctcacaaattttttgatcgtaaaatttagtgacgaaattaaagagggatttt 26415455  T
Q  131 acaatttgcatctctaaattttcctcact 159  Q
    ||  ||| | |||||||| || |||||||    
T  26415454 acgtttttcctctctaaaattccctcact 26415426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 31425510 - 31425565
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  31425510 tcactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 31425565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 48933275 - 48933221
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||||||||| ||||||||||| |||||||||||| || |||||| ||||    
T  48933275 cactattagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaataaaat 48933221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 3872184 - 3872241
Alignment:
Q  19 tttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  3872184 tttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 3872241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 816268 - 816328
Alignment:
Q  99 aaaatttgttgacggaattaaagagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||  ||||||||||| |||||||||| ||  ||| |||||||||||||||||||||    
T  816268 aaaatttagtgacggaattagagagggatttcacgttttccatctctaaattttcctcact 816328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 18217970 - 18217914
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  18217970 ttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 18217914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 42926419 - 42926527
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtga-ggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    ||||| |||||||| |||||||||||| |||||||||||| ||  |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||| |    
T  42926419 cactactagaaaaaataaaattagcgaggaaaattagtgacggaaaaaaatgaaattcctcacaaatttcttagtcgcaaaatttagtgacggaattaga 42926518  T
Q  121 gagggattt 129  Q
    |||||||||    
T  42926519 gagggattt 42926527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 3904478 - 3904585
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |   | ||||||||  ||  |||||||  ||||||||||| ||    
T  3904478 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcgcaaatttcttggtcgcaaaatttagtgacggaattagag 3904577  T
Q  122 agggattt 129  Q
    ||||||||    
T  3904578 agggattt 3904585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 20923958 - 20924065
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| |||||||||||||||||  || | |||||||||| || |||||| |||||||  || ||||| ||  ||| |||||||  |||| |||||| ||    
T  20923958 cactactagaaaaagtaaaattatggagggaaattagtgatggaaaaaataaaatctcttacaaatttgttggtcacaaaatttagtgacagaattagag 20924057  T
Q  122 agggattt 129  Q
    ||||||||    
T  20924058 agggattt 20924065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 23539372 - 23539317
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  23539372 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 23539317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 23699825 - 23699932
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||||| |  ||  |||||||  |||| |||||||||    
T  23699825 cactactagaaaaagaaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcatggtcgcaaaatttagtgacagaattaaag 23699924  T
Q  122 agggattt 129  Q
    ||||||||    
T  23699925 agggattt 23699932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 28801017 - 28800910
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | ||||||||||  | |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||| ||    
T  28801017 cactactagaaaaagcaaaattagcgagggaaattagtgacagaaaaaatgaaattcctcacaaatttcttggtcgcaaaatttagtgacggaattagag 28800918  T
Q  122 agggattt 129  Q
    ||||||||    
T  28800917 agggattt 28800910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 47523650 - 47523704
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| |||||||| |||||||||||| | |||||||||| || |||||||||||    
T  47523650 cactactagaaaaaataaaattagcgagggaaattagtgacggaaaaaatgaaat 47523704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 6849208 - 6849265
Alignment:
Q  19 tttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||| ||||||||| ||||||||||| | |||||||||| ||  ||||||||||    
T  6849208 tttcactactagaaaaagcaaaattagcgagggaaattagtgacggagaaaatgaaat 6849265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 23232180 - 23232124
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||| ||||||||| |||||||| || | |||||||||| || |||||||||||    
T  23232180 ttcactactagaaaaagcaaaattagagagggaaattagtgacggaaaaaatgaaat 23232124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 182668 - 182554
Alignment:
Q  23 actattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaaga 122  Q
    |||| ||||||||||||||||||||| | |||||||||| || ||||||||||| ||  || |||| |||  ||  |||||||  ||||||||||| |||    
T  182668 actactagaaaaagtaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaaattccttggtcgcaaaatttagtgacggaattagaga 182569  T
Q  123 gggatttaacaattt 137  Q
    ||||||| |||||||    
T  182568 gggattttacaattt 182554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 219775 - 219668
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||||| |||||||||| || |||||||||||  |  || ||||| || |||  |||||||  | ||||||||| ||    
T  219775 cactactagaaaaagcaaaattagcgacggaaattagtgacggaaaaaatgaaattcctcacaaattttttaatcgcaaaatttagtaacggaattagag 219676  T
Q  122 agggattt 129  Q
    ||||||||    
T  219675 agggattt 219668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 41736308 - 41736170
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| ||| |||  |||||||  ||||| ||||| |    
T  41736308 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttgatcgcaaaatttagtgacgaaattaga 41736209  T
Q  121 gagggatttaacaatttgcatctctaaattttcctcact 159  Q
    ||||||||| ||| ||| | || ||||||||||||||||    
T  41736208 gagggattttacattttccctcactaaattttcctcact 41736170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 18551252 - 18551360
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| || |||||| ||||||||||| |||||||||||| || |||||||||||  |  || |||| ||| |||  |||||||  ||||||||||| |    
T  18551252 tcactactaaaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaattcctcacaaattccttaatcgcaaaatttagtgacggaattaga 18551351  T
Q  121 gagggattt 129  Q
    |||||||||    
T  18551352 gagggattt 18551360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 12860235 - 12860312
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaattt 105  Q
    ||||||||| |||||||| || |||||||||||| || |||| ||||||| |  ||||||||| | ||||||||||||    
T  12860235 tagaaaaagcaaaattagggaggaaaattagtgacggaaaaagtgaaatccctcactaatttcctcatcataaaattt 12860312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 28262493 - 28262392
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggat 127  Q
    ||||||||||||||||||| | | |||||||||| || |||||||||||  |  || |||||| |  ||| |||||||  ||||||||||| ||||||||    
T  28262493 tagaaaaagtaaaattagcaagggaaattagtgatggaaaaaatgaaattcctcacaaatttcatggtcacaaaatttagtgacggaattagagagggat 28262394  T
Q  128 tt 129  Q
    ||    
T  28262393 tt 28262392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 14757121 - 14757228
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| |||||||| ||| || |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||| ||    
T  14757121 cactactagaaaaagcaaaattagcgaagaaaattaatgacggaaaaaatgaaattcctcacaaatttcttggtcgcaaaatttagtgacggaattagag 14757220  T
Q  122 agggattt 129  Q
    || |||||    
T  14757221 agagattt 14757228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 43408511 - 43408618
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| |||||||| || | |||||||||| || |||||||||||  |  || ||||||||  ||  |||||||  ||||||||||| ||    
T  43408511 cactactagaaaaagcaaaattagtgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcttggtcgcaaaatttagtgacggaattagag 43408610  T
Q  122 agggattt 129  Q
    ||||||||    
T  43408611 agggattt 43408618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 44476374 - 44476429
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  44476374 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 44476429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 12779735 - 12779681
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  12779735 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 12779681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 20065074 - 20065128
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  20065074 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 20065128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 37552362 - 37552308
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  37552362 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 37552308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 2556230 - 2556093
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| || ||||||||||||||| || |||||||||||| || |||||| |||| ||  || ||||||||  |  ||||||||  ||||||||||| ||    
T  2556230 cactactaaaaaaagtaaaattagagaggaaaattagtgatggaaaaaataaaatttctcacaaatttcttggttgtaaaatttagtgacggaattagag 2556131  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |   |||| ||| ||| | |||||||| || |||||||    
T  2556130 aaaaatttcacattttccctctctaaaattccctcact 2556093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 21293710 - 21293818
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||  ||||||||||| | |||||||||| || ||||||||||| ||  || |||| | |  || ||||||||  ||||||||||| |    
T  21293710 tcactactagaaaaaacaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaaattccatggtcgtaaaatttagtgacggaattaga 21293809  T
Q  121 gagggattt 129  Q
    ||| |||||    
T  21293810 gagagattt 21293818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 32009088 - 32009040
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaa 70  Q
    ||||| ||||||||| ||||||||||| |||||||||||| || |||||    
T  32009088 cactactagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaa 32009040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 20182285 - 20182177
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||||||||||||||| | |||||||||| || |||||||||||  |  || |||||| | |||  |||||||  ||||||||||| |    
T  20182285 tcactactagaaaaagtaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcatgatcgcaaaatttagtgacggaattaga 20182186  T
Q  121 gagggattt 129  Q
    |||||||||    
T  20182185 gagggattt 20182177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 22153706 - 22153814
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||||||||||||||| | |||||||||| || |||||||||||  |  || |||||| | |||  |||||||  ||||||||||| |    
T  22153706 tcactactagaaaaagtaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcatgatcgcaaaatttagtgacggaattaga 22153805  T
Q  121 gagggattt 129  Q
    |||||||||    
T  22153806 gagggattt 22153814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 26224568 - 26224460
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || ||||||||  ||| |||||||  ||||||||||| |    
T  26224568 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcttggtcacaaaatttagtgacggaattaga 26224469  T
Q  121 gagggattt 129  Q
    |||||||||    
T  26224468 gagggattt 26224460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 15448524 - 15448417
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| ||| |||  |||||||  ||||||||||| ||    
T  15448524 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttaatcgcaaaatttaatgacggaattagag 15448425  T
Q  122 agggattt 129  Q
    ||||||||    
T  15448424 agggattt 15448417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 9893103 - 9892965
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| |    
T  9893103 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattaga 9893004  T
Q  121 gagggatttaacaatttgcatctctaaattttcctcact 159  Q
    ||||||||| ||  ||| | || |||||||| |||||||    
T  9893003 gagggatttcacgttttccctcactaaatttccctcact 9892965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 22579349 - 22579403
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  22579349 cactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 22579403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 5192195 - 5192296
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggat 127  Q
    ||||||||| ||||||||||| |||||||||||| || |||||||||||  |  || ||||  ||  || ||||||||  ||||||||||| ||||||||    
T  5192195 tagaaaaagcaaaattagcgaggaaaattagtgaaggaaaaaatgaaattcctcacaaattctttggtcgtaaaatttagtgacggaattagagagggat 5192294  T
Q  128 tt 129  Q
    ||    
T  5192295 tt 5192296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 6598605 - 6598496
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  |||||||||||     
T  6598605 ttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattacttggtcgcaaaatttagtgacggaattag 6598506  T
Q  120 agagggattt 129  Q
    ||||||||||    
T  6598505 agagggattt 6598496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 6605495 - 6605550
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  6605495 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 6605550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 25398135 - 25398004
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggat 127  Q
    ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| ||||||||    
T  25398135 tagaaaaagaaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattagagagggat 25398036  T
Q  128 ttaacaatttgcatctctaaattttcctcact 159  Q
    || ||  ||| | || |||||||| |||||||    
T  25398035 tttacgttttccctcactaaatttccctcact 25398004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 28668239 - 28668124
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||||||||||||||| | |||| ||||| || |||||| ||||  |  || |||| ||| |||  |||||||  ||||||||||| |     
T  28668239 cactactagaaaaagtaaaattagcgagggaaatcagtgacggaaaaaataaaattcctcacaaattccttgatcgcaaaatttaatgacggaattagaa 28668140  T
Q  122 agggatttaacaattt 137  Q
    |||||||| |||||||    
T  28668139 agggattttacaattt 28668124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 30833960 - 30834067
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  |||||||| ||  ||  |||||||  |||| |||||| ||    
T  30833960 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcactaattttttggtcgcaaaatttaatgacagaattagag 30834059  T
Q  122 agggattt 129  Q
    ||||||||    
T  30834060 agggattt 30834067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 12160847 - 12160901
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||||||||||||||| | |||||||||| |  |||||||||||    
T  12160847 cactactagaaaaagtaaaattagcgagggaaattagtgacgtaaaaaatgaaat 12160901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 24661009 - 24661063
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  24661009 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 24661063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 28365050 - 28364996
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  28365050 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 28364996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 495625 - 495681
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||| ||||||||| ||||||||| | | |||||||||| || |||||||||||    
T  495625 ttcactactagaaaaagcaaaattagcaagggaaattagtgacggaaaaaatgaaat 495681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 18492502 - 18492454
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  18492502 tagaaaaagcaaaattagcgatgcaaattagtgacggaaaaaatgaaat 18492454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 440102 - 439995
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||||||||||||| | ||| |||||||| || |||||||||||  |  || |||||||| |||  |||||||  ||||||||||| ||    
T  440102 cactactagaaaaagtaaaattagcaaggaatattagtgacggaaaaaatgaaattcctcacaaatttcttgatcgcaaaatttagtgacggaattagag 440003  T
Q  122 agggattt 129  Q
    ||||||||    
T  440002 agggattt 439995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 6817193 - 6817054
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||| ||||||||| ||||||||| | |||||| ||||| || |||||||||||  |  || ||||||||  ||| |||||||  |||||||||||     
T  6817193 ttcactactagaaaaagcaaaattagcaaggaaaatcagtgacggaaaaaatgaaattcctcacaaatttcttggtcacaaaatttagtgacggaattag 6817094  T
Q  120 agagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||| ||||| ||| ||| | || |||||||| |||||||    
T  6817093 agagagattttacattttccctcactaaatttccctcact 6817054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 3823270 - 3823133
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||||||| | |||||||||| || ||||||||||| ||  || ||||  ||  ||  |||||||  ||||||||||| ||    
T  3823270 cactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaatttctcacaaattctttggtcgcaaaatttagtgacggaattagag 3823171  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | || |||||||| |||||||    
T  3823170 agggattttacgttttccctcactaaatttccctcact 3823133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 16061937 - 16061993
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||| ||||||||||||||||||||| | |||||||||| || |||||||||||    
T  16061937 ttcactactagaaaaagtaaaattagcgagggaaattagtgacggaaaaaatgaaat 16061993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 17810436 - 17810328
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| |||||||||||| || |||||||||||  |  || ||||||||  ||  |||||||  ||||| ||||| |    
T  17810436 tcactactagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaattcctcacaaatttcttggtcgcaaaatttagtgacgaaattaga 17810337  T
Q  121 gagggattt 129  Q
    |||||||||    
T  17810336 gagggattt 17810328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 25274740 - 25274680
Alignment:
Q  16 cattttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  25274740 cattttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 25274680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 27910763 - 27910871
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||| |||||||  ||||||||||| |    
T  27910763 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttagtcacaaaatttagtgacggaattaga 27910862  T
Q  121 gagggattt 129  Q
    |||||||||    
T  27910863 gagggattt 27910871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 27957182 - 27957290
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||| |||||||  ||||||||||| |    
T  27957182 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttagtcacaaaatttagtgacggaattaga 27957281  T
Q  121 gagggattt 129  Q
    |||||||||    
T  27957282 gagggattt 27957290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 42700657 - 42700711
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||||||||||||||| |||||| ||||| || |||||||||||    
T  42700657 cactactagaaaaagtaaaattagcgaggaaaatcagtgacggaaaaaatgaaat 42700711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 24193193 - 24193250
Alignment:
Q  19 tttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  24193193 tttcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 24193250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 22939455 - 22939343
Alignment:
Q  17 attttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaat 116  Q
    |||||||||| ||||||||| |||||||| || | |||||||||| || |||||||||||  |  || |||| |||| ||  |||||||  |||||||||    
T  22939455 attttcactactagaaaaagcaaaattagtgaaggaaattagtgacggaaaaaatgaaattcctcacaaattcctttgtcgcaaaatttagtgacggaat 22939356  T
Q  117 taaagagggattt 129  Q
    || |||| |||||    
T  22939355 tagagagagattt 22939343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 40289421 - 40289473
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaa 74  Q
    ||||| |||||||| |||||||||||| |||||||||||| || |||||||||    
T  40289421 cactactagaaaaattaaaattagcgaggaaaattagtgacggaaaaaatgaa 40289473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 8555303 - 8555358
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  8555303 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 8555358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 23752286 - 23752393
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||||||| | | |||||||| || ||||||||||| ||  || |||| |||  ||  |||||||  ||||||||||| ||    
T  23752286 cactattagaaaaagcaaaattagcgagggatattagtgacggaaaaaatgaaatttctcacaaattccttggtcgcaaaatttagtgacggaattagag 23752385  T
Q  122 agggattt 129  Q
    || |||||    
T  23752386 agtgattt 23752393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 31344182 - 31344309
Alignment:
Q  32 aaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggatttaa 131  Q
    |||||||||||||| || | |||||||||| || |||||| |||| ||  |  |||||||| |||  |||||||  ||||||||||| ||||| |||| |    
T  31344182 aaaagtaaaattagagaaggaaattagtgatggaaaaaatcaaatttctcataaatttcttgatcgcaaaatttaatgacggaattagagaggaatttca 31344281  T
Q  132 caatttgcatctctaaattttcctcact 159  Q
    || ||| | |||||||| || |||||||    
T  31344282 cattttccctctctaaaattccctcact 31344309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 4331115 - 4331061
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  4331115 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 4331061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 19241004 - 19240950
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  19241004 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 19240950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 19314188 - 19314134
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  19314188 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 19314134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 19488061 - 19488115
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  19488061 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 19488115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 24576024 - 24576078
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  24576024 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 24576078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 25000431 - 25000485
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| |||||||||||||||||| || | |||||||||| || |||||||||||    
T  25000431 cactactagaaaaagtaaaattagtgagggaaattagtgacggaaaaaatgaaat 25000485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 27869375 - 27869321
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  27869375 cactactagaaaaagcaaaattagcgagggaaattagtgatggaaaaaatgaaat 27869321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 14304359 - 14304311
Alignment:
Q  29 agaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatc 77  Q
    |||||||| ||||||||||| | |||||||||| || ||||||||||||    
T  14304359 agaaaaagcaaaattagcgagggaaattagtgatggaaaaaatgaaatc 14304311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 18010067 - 18010167
Alignment:
Q  29 agaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggatt 128  Q
    |||||||| |||||||||||   |||||||||| || |||||||||||  |  || |||| ||| |||  |||||||  ||||||||||| |||||||||    
T  18010067 agaaaaagcaaaattagcgagagaaattagtgacggaaaaaatgaaattcctcacaaattccttgatcgcaaaatttagtgacggaattagagagggatt 18010166  T
Q  129 t 129  Q
    |    
T  18010167 t 18010167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 24636790 - 24636682
Alignment:
Q  22 cactattagaaaa-agtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    ||||| ||||||| || ||||||| ||| | |||||||||| || |||||||||||  |  || |||||||| |||  |||||||  ||||||||||| |    
T  24636790 cactactagaaaatagcaaaattaacgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcttgatcgcaaaatttagtgacggaattaga 24636691  T
Q  121 gagggattt 129  Q
    |||||||||    
T  24636690 gagggattt 24636682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 28265475 - 28265529
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||||||||||||||| |||||||||||| || |||||||||||    
T  28265475 cactactagaaaaagtaaaattagcgaggaaaattagtgacggaaaaaatgaaat 28265529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 12045866 - 12045729
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || ||||||||  || ||||||||  ||||||||||| ||    
T  12045866 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaatttcttggtcgtaaaatttagtgacggaattagag 12045767  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    | |||||| ||  ||| | || |||||||| |||||||    
T  12045766 aaggattttacgttttccctcactaaatttccctcact 12045729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 618433 - 618326
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| ||    
T  618433 cactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattagag 618334  T
Q  122 agggattt 129  Q
    ||||||||    
T  618333 agggattt 618326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 4125187 - 4125242
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||||||||||||||| | |||||||||| || |||||||||||    
T  4125187 tcactactagaaaaagtaaaattagcgagggaaattagtgacggaaaaaatgaaat 4125242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 16631874 - 16631981
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||| |||||||  ||||||||||| ||    
T  16631874 cactactagaaaaagaaaaattagcgagggaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcacaaaatttagtgacggaattagag 16631973  T
Q  122 agggattt 129  Q
    ||||||||    
T  16631974 agggattt 16631981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 24138841 - 24138948
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||||||||||||| ||||||||||| ||||||| |||| || ||||||||||| ||  || |||| |||  ||  |||||||  ||||||||||| ||    
T  24138841 cactattagaaaaagcaaaattagcgaggaaaattggtgacggaaaaaatgaaatttctcacaaattgcttggtcgcaaaatttagtgacggaattagag 24138940  T
Q  122 agggattt 129  Q
    || |||||    
T  24138941 agagattt 24138948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 23409120 - 23408982
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtga-ggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    ||||| ||||||||| |||||||||||  ||||||||||| ||  |||||||||||  |  || |||||||| |||  |||||||  ||||||||||| |    
T  23409120 cactactagaaaaagcaaaattagcgagaaaaattagtgacggaaaaaaatgaaattcctcacaaatttcttgatcgcaaaatttagtgacggaattaga 23409021  T
Q  121 gagggatttaacaatttgcatctctaaattttcctcact 159  Q
    ||||||||| ||  ||| | || |||||||| |||||||    
T  23409020 gagggattttacgttttccctcactaaatttccctcact 23408982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 25652581 - 25652719
Alignment:
Q  20 ttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaa 119  Q
    ||||||||||||||||| ||||||||||| | |||| |||||  | |||||||||||  |  || |||| |||  ||  |||||||  |||||||||||     
T  25652581 ttcactattagaaaaagcaaaattagcgagggaaatcagtgacagaaaaaatgaaattcctcacaaattccttagtcgcaaaattttgtgacggaattag 25652680  T
Q  120 agagggatttaacaatttgcatctctaaattttcctcac 158  Q
    |||||||||| ||| ||| | || |||||||| ||||||    
T  25652681 agagggattttacattttccctcactaaatttccctcac 25652719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 7888936 - 7888799
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||| ||| || |||||||||||  |  || |||| |||  || ||||||||  ||||||| ||| ||    
T  7888936 cactactagaaaaagcaaaattagcgagggaaattattgacggaaaaaatgaaattcctcacaaattccttggtcgtaaaatttagtgacggagttagag 7888837  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||  ||| | || ||||||||||||||||    
T  7888836 agggattttacgttttccctcactaaattttcctcact 7888799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 16121839 - 16121946
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||| ||||  |  || |||| |||  ||| |||||||  ||||||||||| ||    
T  16121839 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaataaaattcctcacaaattccttggtcacaaaatttagtgacggaattagag 16121938  T
Q  122 agggattt 129  Q
    ||||||||    
T  16121939 agggattt 16121946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 17039631 - 17039738
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| |||||||| || |||||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| ||    
T  17039631 cactactagaaaaagcaaaattagtgaggaaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattagag 17039730  T
Q  122 agggattt 129  Q
    ||||||||    
T  17039731 agggattt 17039738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 38837670 - 38837725
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  38837670 tcactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 38837725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 23974576 - 23974682
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||| ||||| ||||||||  | |||||||||||| || |||||| |||||||  || |||| |||| || ||||||||  ||||| ||||| ||    
T  23974576 cactactaggaaaagaaaaattaggaaggaaaattagtgacggaaaaaataaaatctctcacaaattcctttgtcgtaaaatttaatgacgaaattagag 23974675  T
Q  122 agggatt 128  Q
    |||||||    
T  23974676 agggatt 23974682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 36196533 - 36196479
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  36196533 cactactagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 36196479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 20959647 - 20959510
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| |||||||||||||||||| || |||||| | ||| || |||||| ||||  |  || |||| |||  || ||||||||  ||||||||||| ||    
T  20959647 cactactagaaaaagtaaaattagggaggaaaatcactgacggaaaaaataaaattcctcacaaattccttagtcgtaaaatttagtgacggaattagag 20959548  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    || ||||| ||  ||| | ||||||||||| |||||||    
T  20959547 agagatttcacgttttccctctctaaatttccctcact 20959510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 35620344 - 35620393
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaat 71  Q
    ||||||||||||||| ||||||||||| | |||||||||| || ||||||    
T  35620344 cactattagaaaaagcaaaattagcgagggaaattagtgacggaaaaaat 35620393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 27428089 - 27428149
Alignment:
Q  99 aaaatttgttgacggaattaaagagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||  ||||||||||| |||||||||| ||  ||| | |||||||||||||||||||    
T  27428089 aaaatttagtgacggaattagagagggatttcacgttttccctctctaaattttcctcact 27428149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 3881 - 3774
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||||| |||||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| ||    
T  3881 cactactagaaaaagcaaaattagcgaggaaaattagtgacggaaaaaatgaaattcctcacaaattccttggtcgcaaaatttagtgacggaattagag 3782  T
Q  122 agggattt 129  Q
    ||||||||    
T  3781 agggattt 3774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 202914 - 202776
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaa 120  Q
    |||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||  |  || |||| |||  ||  |||||||  ||||||||||| |    
T  202914 tcactactagaaaaagaaaaattagcgagggaaattagtgacggaaaaaatgaaattgctcacaaattccttggtcgcaaaatttagtgacggaattaga 202815  T
Q  121 gagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||| |||| ||  ||| | || ||||||||||||||||    
T  202814 gaggaattttacgttttccctcactaaattttcctcact 202776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 84442 - 84305
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaag 121  Q
    ||||| ||||||||| ||||||||| | | |||||||||| || |||||||||||  |  || |||||| |  ||| |||||||  ||||||||||| ||    
T  84442 cactactagaaaaagcaaaattagcaagggaaattagtgacggaaaaaatgaaattcctcacaaatttcatggtcacaaaatttagtgacggaattagag 84343  T
Q  122 agggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||| ||| ||| | || | |||||| |||||||    
T  84342 agggatttcacattttccctcacaaaatttccctcact 84305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 8116 - 8217
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggat 127  Q
    ||||||||| ||||||||||| | |||||| ||| || |||||||||||  | ||| |||| |||  ||  |||||||  ||||||||||| ||||||||    
T  8116 tagaaaaagcaaaattagcgagggaaattaatgacggaaaaaatgaaattcctaacaaattccttggtcgcaaaatttagtgacggaattagagagggat 8215  T
Q  128 tt 129  Q
    ||    
T  8216 tt 8217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 21848 - 21949
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaattaaagagggat 127  Q
    ||||||||| ||||||||||| | |||||| ||| || |||||||||||  | ||| |||| |||  ||  |||||||  ||||||||||| ||||||||    
T  21848 tagaaaaagcaaaattagcgagggaaattaatgacggaaaaaatgaaattcctaacaaattccttggtcgcaaaatttagtgacggaattagagagggat 21947  T
Q  128 tt 129  Q
    ||    
T  21948 tt 21949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 7589 - 7541
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||||||||||| ||| |||||||||||| || |||||||||||    
T  7589 tagaaaaagtaaaattaacgaggaaaattagtgacggaaaaaatgaaat 7541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 173585 - 173531
Alignment:
Q  21 tcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    |||||||||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  173585 tcactattagaaaaagcaaaattagcga-ggaaattagtgacggaaaaaatgaaat 173531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 26622 - 26568
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| |||||||| |||| |||||||||| || |||||||||||    
T  26622 cactactagaaaaagcaaaattagtgacggaaattagtgacggaaaaaatgaaat 26568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 44056 - 44002
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  44056 cactactagaaaaagaaaaattagcgagggaaattagtgatggaaaaaatgaaat 44002  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 39703 - 39757
Alignment:
Q  22 cactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  39703 cactactagaaaaagcaaaattagcgagggaaattagtgatggaaaaaatgaaat 39757  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 22353 - 22243
Alignment:
Q  19 tttcactattagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaatctccaactaatttctttatcataaaatttgttgacggaatta 118  Q
    |||||||| ||||||||| ||||||||||| | |||||||||| |  |||||||||||  |  || |||| |||  ||  |||||||  |||||||||||    
T  22353 tttcactactagaaaaagcaaaattagcgagggaaattagtgacgaaaaaaatgaaattcctcacaaattccttagtcgcaaaatttagtgacggaatta 22254  T
Q  119 aagagggattt 129  Q
     ||||||||||    
T  22253 gagagggattt 22243  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 10669 - 10717
Alignment:
Q  28 tagaaaaagtaaaattagcgacgaaaattagtgaggggaaaaatgaaat 76  Q
    ||||||||| ||||||||||| | |||||||||| || |||||||||||    
T  10669 tagaaaaagcaaaattagcgagggaaattagtgacggaaaaaatgaaat 10717  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 112390 - 112330
Alignment:
Q  99 aaaatttgttgacggaattaaagagggatttaacaatttgcatctctaaattttcctcact 159  Q
    |||||||  ||||||||||| |||||||||||||  ||| | ||||| |||||||||||||    
T  112390 aaaatttaatgacggaattagagagggatttaacgtttttcctctctgaattttcctcact 112330  T

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