View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8840_2 (Length: 477)
Name: NF8840_2
Description: NF8840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8840_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Original strand, 54615935 - 54616384
Alignment:
| Q |
15 |
aataaaatcaagttttagtcttatatctgaataatcatgtatgatgcaggttagaagggaaaagattagtcgagagagatgaagtatttgcaagatttag |
114 |
Q |
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| T |
54615935 |
aataaaatcaagttttagtcttatatctgaataattatgtatgatgcaggttagaagggaaaagattagt-gagaga-atgaagtatttgcaagatttag |
54616032 |
T |
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| Q |
115 |
tacctggatgcaacaaaattacaggaaaagctggaatgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttgaggtaattagttaatt |
214 |
Q |
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| T |
54616033 |
taccaggatgcaacaaaattacaggaaaagctggaatgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttgaggtaattagttaatt |
54616132 |
T |
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| Q |
215 |
aggttcattacattgattcttaatttgcctatcacattgatctatgttaattttctttgcagttcttgtcaatgaaattagctactgtgaatccaaggct |
314 |
Q |
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| T |
54616133 |
aggttcattacattgattcttaatttgcctatcacattgatctatgttaattttctttgcagttcttgtcaatgaaattagctactgtgaatccaaggct |
54616232 |
T |
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| Q |
315 |
tgatttcaatattgatgatctatttgaaaaagaggtacgtaataaagaatatgcagatggaagaatttcacttttcacttttcacttaattatagcttaa |
414 |
Q |
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| T |
54616233 |
tgatttcaatattgatgatctatttgaaaaagaggtacgtaataaagaatatgcagatggaagaatttcacttttcacttttca-----------cttaa |
54616321 |
T |
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| Q |
415 |
ttttaaatctgtaatattaatatgttgattccttacacaggtttttcctacttgtgatgcaaa |
477 |
Q |
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| T |
54616322 |
ttttaaatctgtaatattaatatgctgattcctcacacaggtttttcctaattgtgatgcaaa |
54616384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 26484393 - 26484534
Alignment:
| Q |
59 |
tgcaggttagaagggaaaagattagtcgagagagatgaagtatttgcaagatttagtacctggatgcaacaaaattacaggaaaagctggaatgcttgat |
158 |
Q |
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| T |
26484393 |
tgcaggttagaagggaaaaaataag-cgaaag-gatgaagtatttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgat |
26484490 |
T |
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| Q |
159 |
gaaatcattaactatgttcagtctcttcaaaaacaagttgaggt |
202 |
Q |
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| T |
26484491 |
gaaattattaactatgttcagtctcttcaaagacaagtcgaggt |
26484534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 26484640 - 26484700
Alignment:
| Q |
272 |
tgcagttcttgtcaatgaaattagctactgtgaatccaaggcttgatttcaatattgatga |
332 |
Q |
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| T |
26484640 |
tgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatga |
26484700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 27329879 - 27329932
Alignment:
| Q |
150 |
atgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttgaggta |
203 |
Q |
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| T |
27329879 |
atgctagatgaaatcattaattatgtacagtctcttcagcaacaagttgaggta |
27329932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 21357827 - 21357774
Alignment:
| Q |
150 |
atgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttgaggta |
203 |
Q |
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| T |
21357827 |
atgctggatgaaatcatcaactatgtacagtcacttcaacgacaagttgaggta |
21357774 |
T |
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