View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8840_3 (Length: 440)
Name: NF8840_3
Description: NF8840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8840_3 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 63 - 411
Target Start/End: Original strand, 26315575 - 26315930
Alignment:
| Q |
63 |
gagggttagataatatttatgtcatataaacacaatgtagattatattatattatatta-----gaatagattagagggggcaaagagatatatcatttg |
157 |
Q |
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| T |
26315575 |
gagggttagttaatatttatgtcatataaacacaatgtagattatattatattatattatattagaatagattagagggggcaaaaagatatatcatttg |
26315674 |
T |
|
| Q |
158 |
nnnnnnnntagagcataaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcat |
257 |
Q |
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| T |
26315675 |
aaaaaaaatagagcataaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcat |
26315774 |
T |
|
| Q |
258 |
tgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccactacaataatagccata--atggtgaca |
355 |
Q |
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| T |
26315775 |
tgaaacctaattcatcaacaacccagttatcgctgtcacattcaataatggttttgtcaaagtcgaaaaccactacaatactagccataatatggtgaca |
26315874 |
T |
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| Q |
356 |
gagaaatattttgtttgtttttgagaaaaccaagaatttattatactacaatacgt |
411 |
Q |
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| T |
26315875 |
aagaaatattttgtttgtttttaaaaaaaccaagaatttattatactgcaatacgt |
26315930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 174 - 348
Target Start/End: Original strand, 43110799 - 43110973
Alignment:
| Q |
174 |
aaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatc |
273 |
Q |
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| T |
43110799 |
aaaacacaaatcttcgaacatataaaaatcttaccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatc |
43110898 |
T |
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| Q |
274 |
aacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccactacaataatagccataat |
348 |
Q |
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| T |
43110899 |
aacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaaaaaccacaacaatattagccataat |
43110973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 5269026 - 5268904
Alignment:
| Q |
205 |
taccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgata |
304 |
Q |
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| T |
5269026 |
taccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaatt |
5268927 |
T |
|
| Q |
305 |
atggttttgtcaaagtcgaaaac |
327 |
Q |
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| T |
5268926 |
atggttttatcgaagtcgaaaac |
5268904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 337
Target Start/End: Complemental strand, 5249791 - 5249659
Alignment:
| Q |
205 |
taccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgata |
304 |
Q |
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| T |
5249791 |
taccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcacaatcaatt |
5249692 |
T |
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| Q |
305 |
atggttttgtcaaagtcgaaaaccactacaata |
337 |
Q |
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| T |
5249691 |
atggttttatcaaaatcaaaaactacaacaata |
5249659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 5276756 - 5276850
Alignment:
| Q |
233 |
ggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaac |
327 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| |||||||||| | ||| ||||| |||||||| || || || ||||||||||| || ||||| |
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| T |
5276756 |
ggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaaaatcaaaaac |
5276850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 5272783 - 5272878
Alignment:
| Q |
231 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaa |
326 |
Q |
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| T |
5272783 |
tgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcactatcacaatcaatgatggttttgtcaaagtcaaaaa |
5272878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 19569227 - 19569168
Alignment:
| Q |
238 |
gagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcaca |
297 |
Q |
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| T |
19569227 |
gagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcaca |
19569168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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