View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8840_4 (Length: 353)

Name: NF8840_4
Description: NF8840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8840_4
NF8840_4
[»] chr4 (15 HSPs)
chr4 (124-341)||(40997203-40997422)
chr4 (2-123)||(3102540-3102661)
chr4 (2-122)||(13690216-13690336)
chr4 (1-123)||(9231580-9231702)
chr4 (2-123)||(40533963-40534084)
chr4 (45-123)||(3102726-3102804)
chr4 (58-124)||(40534162-40534228)
chr4 (58-123)||(5121006-5121071)
chr4 (58-123)||(11147014-11147079)
chr4 (58-123)||(18381508-18381573)
chr4 (46-123)||(18936864-18936941)
chr4 (46-123)||(37177813-37177890)
chr4 (46-123)||(18936676-18936752)
chr4 (61-104)||(9231782-9231825)
chr4 (45-120)||(11147211-11147285)
[»] chr1 (25 HSPs)
chr1 (1-123)||(10227854-10227976)
chr1 (2-119)||(19059378-19059495)
chr1 (2-121)||(26551992-26552111)
chr1 (58-123)||(10227712-10227777)
chr1 (46-123)||(23346419-23346496)
chr1 (58-123)||(26552191-26552256)
chr1 (51-124)||(48752586-48752658)
chr1 (62-123)||(48871440-48871501)
chr1 (44-124)||(50893148-50893227)
chr1 (45-124)||(48871246-48871324)
chr1 (45-123)||(28217530-28217607)
chr1 (45-114)||(23346607-23346675)
chr1 (58-123)||(28217718-28217783)
chr1 (46-123)||(50892963-50893040)
chr1 (52-123)||(42180571-42180641)
chr1 (45-123)||(4156892-4156969)
chr1 (45-123)||(7062183-7062260)
chr1 (46-123)||(41833874-41833951)
chr1 (58-114)||(19059577-19059633)
chr1 (58-122)||(39669257-39669321)
chr1 (52-123)||(41834069-41834139)
chr1 (47-122)||(50905100-50905175)
chr1 (46-122)||(50904992-50905070)
chr1 (46-92)||(7062038-7062084)
chr1 (46-92)||(42180759-42180805)
[»] chr2 (22 HSPs)
chr2 (2-123)||(31860079-31860200)
chr2 (2-123)||(42028721-42028842)
chr2 (2-123)||(7317635-7317756)
chr2 (2-123)||(16115187-16115308)
chr2 (2-123)||(13279840-13279954)
chr2 (60-123)||(13280036-13280099)
chr2 (58-123)||(7317834-7317899)
chr2 (58-123)||(31860284-31860349)
chr2 (58-123)||(36059286-36059351)
chr2 (58-123)||(42028578-42028643)
chr2 (42-124)||(2059489-2059571)
chr2 (46-123)||(15332849-15332926)
chr2 (44-122)||(3671822-3671899)
chr2 (58-123)||(2059683-2059748)
chr2 (58-123)||(16115046-16115111)
chr2 (46-123)||(31470587-31470663)
chr2 (58-124)||(38085966-38086031)
chr2 (44-124)||(31470763-31470842)
chr2 (66-124)||(15330448-15330505)
chr2 (46-124)||(38086154-38086232)
chr2 (46-124)||(3672010-3672088)
chr2 (93-123)||(36059248-36059278)
[»] scaffold0214 (2 HSPs)
scaffold0214 (1-123)||(11769-11891)
scaffold0214 (58-119)||(11630-11691)
[»] chr3 (13 HSPs)
chr3 (2-123)||(33219072-33219193)
chr3 (2-121)||(10598810-10598929)
chr3 (5-123)||(33214585-33214703)
chr3 (2-123)||(36274268-36274389)
chr3 (58-123)||(27073107-27073172)
chr3 (58-123)||(33214443-33214508)
chr3 (2-123)||(27072913-27073027)
chr3 (46-123)||(19580497-19580574)
chr3 (46-123)||(36635425-36635502)
chr3 (58-123)||(36274120-36274184)
chr3 (61-123)||(10599000-10599062)
chr3 (58-120)||(36635241-36635302)
chr3 (46-123)||(11651000-11651077)
[»] chr5 (30 HSPs)
chr5 (2-123)||(130254-130375)
chr5 (2-123)||(42630711-42630832)
chr5 (5-123)||(26534506-26534624)
chr5 (2-123)||(8323707-8323828)
chr5 (2-123)||(791737-791867)
chr5 (58-123)||(26534697-26534762)
chr5 (58-121)||(8323907-8323970)
chr5 (58-123)||(791592-791657)
chr5 (46-123)||(6518203-6518280)
chr5 (46-123)||(19898941-19899018)
chr5 (46-123)||(33377835-33377912)
chr5 (44-123)||(35454451-35454529)
chr5 (46-120)||(35454637-35454710)
chr5 (62-123)||(130451-130512)
chr5 (46-123)||(5146690-5146767)
chr5 (51-123)||(14388512-14388583)
chr5 (46-124)||(13823335-13823413)
chr5 (58-120)||(42630906-42630968)
chr5 (46-123)||(8489123-8489200)
chr5 (58-123)||(14069861-14069925)
chr5 (44-124)||(5146503-5146582)
chr5 (52-120)||(19897228-19897295)
chr5 (60-123)||(6518404-6518466)
chr5 (58-124)||(228716-228782)
chr5 (46-123)||(40881792-40881867)
chr5 (58-123)||(13823150-13823214)
chr5 (62-120)||(228987-229044)
chr5 (58-106)||(40882018-40882066)
chr5 (283-320)||(33757614-33757651)
chr5 (60-108)||(27319668-27319716)
[»] chr6 (8 HSPs)
chr6 (3-123)||(33022164-33022284)
chr6 (58-122)||(33022367-33022431)
chr6 (45-122)||(7789856-7789933)
chr6 (46-125)||(21389019-21389098)
chr6 (45-120)||(21389208-21389282)
chr6 (45-112)||(7789678-7789744)
chr6 (44-122)||(29859735-29859813)
chr6 (66-122)||(28472568-28472624)
[»] scaffold0135 (2 HSPs)
scaffold0135 (1-123)||(37446-37568)
scaffold0135 (61-104)||(37648-37691)
[»] chr8 (13 HSPs)
chr8 (2-123)||(37994708-37994829)
chr8 (2-123)||(44036814-44036935)
chr8 (45-123)||(2814430-2814508)
chr8 (58-124)||(37994907-37994973)
chr8 (46-123)||(14193512-14193588)
chr8 (46-123)||(397192-397269)
chr8 (58-123)||(41539770-41539835)
chr8 (58-123)||(41539970-41540034)
chr8 (45-123)||(2814243-2814320)
chr8 (62-123)||(397007-397067)
chr8 (58-123)||(14193324-14193388)
chr8 (58-107)||(25101746-25101795)
chr8 (45-123)||(40587976-40588054)
[»] chr7 (10 HSPs)
chr7 (2-123)||(19804797-19804918)
chr7 (46-123)||(7298635-7298712)
chr7 (58-123)||(40521215-40521280)
chr7 (45-123)||(40521016-40521093)
chr7 (58-123)||(19805613-19805678)
chr7 (44-124)||(28948991-28949070)
chr7 (45-123)||(16979604-16979681)
chr7 (62-123)||(7298840-7298900)
chr7 (51-120)||(46567960-46568028)
chr7 (58-97)||(46568157-46568196)
[»] scaffold0140 (1 HSPs)
scaffold0140 (45-123)||(15847-15925)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 124 - 341
Target Start/End: Original strand, 40997203 - 40997422
Alignment:
Q  124 ccggaacataagcttatacacgtttattttactctccggcctcccgaaggcaccaaagacaaaggcat-gaagtgctatccattccatatatgatgtcgg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  40997203 ccggaacataagcttatacacgtttattttactctccggcctcccgaagataccaaagacaaaggcattgaagtgttatccattccatatatgatgtcgg 40997302  T
Q  223 ataaataatcattttcatccttcttgaatgtgtaacgagttgagtaatagtccttcaatcaattgtattgaaattttaaaataa-ttttttattgtgtaa 321  Q
    ||||||| | ||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  40997303 ataaatagttattttgatcttttttgaatgtgttacgagttgagtaatagtccttcaatcaattgtatcgaaattttaaaataatttttttactgtgtaa 40997402  T
Q  322 tttgtaatgaaaataatctc 341  Q
    ||||||||||||||| ||||    
T  40997403 tttgtaatgaaaatagtctc 40997422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 3102661 - 3102540
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  3102661 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggtt 3102562  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  3102561 cgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 13690336 - 13690216
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  13690336 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggtt 13690237  T
Q  102 cgttcctacacaagaatttct 122  Q
    |||||||||||||||||||||    
T  13690236 cgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9231702 - 9231580
Alignment:
Q  1 tgtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggt 100  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| |||||||||||||||||||||||||||||||| |||| |||||    
T  9231702 tgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggt 9231603  T
Q  101 tcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||    
T  9231602 tcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 40534084 - 40533963
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| | |||||||||||||||||||||||||| |||||||||||||||    
T  40534084 gtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggtt 40533985  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  40533984 cgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 3102726 - 3102804
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3102726 aaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 40534162 - 40534228
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40534162 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 40534228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 5121006 - 5121071
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  5121006 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 11147079 - 11147014
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  11147079 tgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 18381508 - 18381573
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||    
T  18381508 tgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 18936864 - 18936941
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||| ||||||||||| ||||||  ||||||||||||||| |||||||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 37177813 - 37177890
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  37177813 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 18936752 - 18936676
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 9231782 - 9231825
Alignment:
Q  61 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9231782 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 11147211 - 11147285
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    ||||| ||||||||||||| ||||||||| ||||||||||| || ||| ||||| |||||| ||||| ||||||||    
T  11147211 aaaaaaaatgacatgtcatattttaatttattgtttgtaagaataata-gttagattcgtttctacataagaattt 11147285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 10227854 - 10227976
Alignment:
Q  1 tgtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggt 100  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  10227854 tgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggt 10227953  T
Q  101 tcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||    
T  10227954 tcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 19059495 - 19059378
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||| ||||| | || ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19059495 gtgatcttccatcaccattcaccaccaccaccattcatagtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 19059396  T
Q  102 cgttcctacacaagaatt 119  Q
    ||||||||||||||||||    
T  19059395 cgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 26552111 - 26551992
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| || ||| ||||||||| |||||||||||||||||||||||| ||    
T  26552111 gtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagatt 26552012  T
Q  102 cgttcctacacaagaatttc 121  Q
    ||||||||||||||||||||    
T  26552011 cgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 10227777 - 10227712
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10227777 tgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 23346496 - 23346419
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  23346496 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 26552191 - 26552256
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26552191 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 48752586 - 48752658
Alignment:
Q  51 aatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctcc 48752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 48871440 - 48871501
Alignment:
Q  62 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  48871440 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 50893148 - 50893227
Alignment:
Q  44 gaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||| |||||  |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  50893148 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgatag-ttaggttcgttcctacacaagaatttctcc 50893227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 48871324 - 48871246
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    ||||| |||||  ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  48871324 aaaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgatag-ttaggttcgttcctacacaagaatttctcc 48871246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 28217607 - 28217530
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||    
T  28217607 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 23346607 - 23346675
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 114  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  23346607 aaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 28217718 - 28217783
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  28217718 tgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 50893040 - 50892963
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||| ||||||||    
T  50893040 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 42180641 - 42180571
Alignment:
Q  52 atgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| |||||||||||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgctag-ttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 4156969 - 4156892
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| |||||| |||||||||||||||| || |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4156969 aaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 7062183 - 7062260
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| |||||| |||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  7062183 aaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 41833951 - 41833874
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||  |||| |||||| ||| |||||||||||||    
T  41833951 aaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 19059577 - 19059633
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 114  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  19059577 tgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 39669257 - 39669321
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 122  Q
    ||||||||||||||||||| |||||||| |||||| |||| ||||||| ||||||||||||||||    
T  39669257 tgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 41834069 - 41834139
Alignment:
Q  52 atgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| |||||||||||||||||||||||||||  ||| || |||| |||||||||||||||||||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 50905100 - 50905175
Alignment:
Q  47 aaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 122  Q
    |||||||||| | |||||||||||||||||||||||||| |||||| ||||| ||||||  ||||||| |||||||    
T  50905100 aaataatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 50905070 - 50904992
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggt--taggttcgttcctacacaagaatttct 122  Q
    |||| |||||| ||||||||||||| |||||||||||||  ||||||  |  |||||||||||||||||||||||||||    
T  50905070 aaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 7062084 - 7062038
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgata 92  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||||    
T  7062084 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 42180759 - 42180805
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgata 92  Q
    ||||||||||  |||||||||||| ||||||||||||||| ||||||    
T  42180759 aaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgata 42180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 31860200 - 31860079
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  31860200 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggtt 31860101  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  31860100 cgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 42028721 - 42028842
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  42028721 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggtt 42028820  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  42028821 cgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 7317756 - 7317635
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| |||||||||||| ||||||||| |||||||||||||||||||||    
T  7317756 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggtt 7317657  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||| | ||||||    
T  7317656 cgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 16115187 - 16115308
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||  |||||| ||||| ||||||||||||||| |||||||||||||||    
T  16115187 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggtt 16115286  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||| ||||||||    
T  16115287 cgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 13279954 - 13279840
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| |||||||||| |||||| | | |||||||||||| || ||       ||||||||||||||||||||||||||||||| |||||||    
T  13279954 gtgatcttccatcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttgtttgtaaggatgatagattaggtt 13279862  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  13279861 cgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 13280036 - 13280099
Alignment:
Q  60 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13280036 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 7317834 - 7317899
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7317834 tgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 31860284 - 31860349
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31860284 tgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 36059286 - 36059351
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36059286 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 42028643 - 42028578
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42028643 tgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 2059571 - 2059489
Alignment:
Q  42 tggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||||| |||||  |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2059571 tggaaaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctcc 2059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 15332849 - 15332926
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  15332849 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 3671899 - 3671822
Alignment:
Q  44 gaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 122  Q
    |||||| |||||  |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3671899 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 2059683 - 2059748
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  2059683 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 16115111 - 16115046
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  16115111 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 31470663 - 31470587
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  31470663 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 38086031 - 38085966
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  38086031 tgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctcc 38085966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 31470763 - 31470842
Alignment:
Q  44 gaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||| |||||  ||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  31470763 gaaaaaaaatgatgtgtcattatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaaaaatttctcc 31470842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 15330505 - 15330448
Alignment:
Q  66 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctcc 15330448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 38086154 - 38086232
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||| |||||| | |||| ||||||||||||||||||||| |||||| |||||||| || ||||||||| |||||||||    
T  38086154 aaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctcc 38086232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 3672010 - 3672088
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||| |||||| ||| || |||||||||||| |||||||  ||||||  |||| ||||||||| || ||||||||||||    
T  3672010 aaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctcc 3672088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 36059278 - 36059248
Alignment:
Q  93 ggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||||||    
T  36059278 ggttaggttcgttcctacacaagaatttctc 36059248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 11769 - 11891
Alignment:
Q  1 tgtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggt 100  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||    
T  11769 tgtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggt 11868  T
Q  101 tcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||    
T  11869 tcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 11691 - 11630
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11691 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 33219193 - 33219072
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  33219193 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggtt 33219094  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  33219093 cgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 10598929 - 10598810
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  10598929 gtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggtt 10598830  T
Q  102 cgttcctacacaagaatttc 121  Q
    ||||||||||||||||||||    
T  10598829 cgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 33214585 - 33214703
Alignment:
Q  5 atcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 104  Q
    |||||||||| ||||||||||||||||||| | |||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  33214585 atcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgt 33214684  T
Q  105 tcctacacaagaatttctc 123  Q
    |||||||||||||||||||    
T  33214685 tcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 36274268 - 36274389
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||| ||    
T  36274268 gtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagatt 36274367  T
Q  102 cgttcctacacaagaatttctc 123  Q
    |||||||||| |||||||||||    
T  36274368 cgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 27073107 - 27073172
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27073107 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 33214508 - 33214443
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33214508 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 27073027 - 27072913
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| |||||||||| |||||| | | |||||||||||| || ||       ||||||||||||||||||||||||||||||| |||||||    
T  27073027 gtgatcttccatcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttgtttgtaaggatgatagattaggtt 27072935  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  27072934 cgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 19580497 - 19580574
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  19580497 aaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 36635425 - 36635502
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  36635425 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 36274184 - 36274120
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  36274184 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctc 36274120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  61 catgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 36635302 - 36635241
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  36635302 tgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 11651077 - 11651000
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| ||||| || |||| |||||| |||||||||||||| |||||| ||||||||||||| || |||||||||||||    
T  11651077 aaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 130375 - 130254
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  130375 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggtt 130276  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  130275 cgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 42630832 - 42630711
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||    
T  42630832 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggtt 42630733  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||| ||||||||||||||||    
T  42630732 cgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 26534624 - 26534506
Alignment:
Q  5 atcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgt 104  Q
    |||||||||| ||||||||||||||||||| | |||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26534624 atcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgt 26534525  T
Q  105 tcctacacaagaatttctc 123  Q
    |||||||||||||||||||    
T  26534524 tcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 8323828 - 8323707
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  8323828 gtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggtt 8323729  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  8323728 cgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 791737 - 791867
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgt---------tttaatttgttgtttgtaaggatgata 92  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||         ||||||||||||||||||| |||||||    
T  791737 gtgatcttccatcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgtttaatttgttgtttgtaaagatgata 791836  T
Q  93 ggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||||||    
T  791837 ggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 26534697 - 26534762
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26534697 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 8323907 - 8323970
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttc 121  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8323907 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 791657 - 791592
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  791657 tgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 6518280 - 6518203
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  6518280 aaaacaatgacatgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 19898941 - 19899018
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||    
T  19898941 aaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 33377835 - 33377912
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  33377835 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 35454529 - 35454451
Alignment:
Q  44 gaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  35454529 gaaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 35454637 - 35454710
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35454637 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 130451 - 130512
Alignment:
Q  62 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  130451 atgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 5146690 - 5146767
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||||    
T  5146690 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 14388512 - 14388583
Alignment:
Q  51 aatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 13823335 - 13823413
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||| |||||| ||||||||||||||||||| |||||||  |||||| |||| ||||||||||||||||||||||||||    
T  13823335 aaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctcc 13823413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 42630906 - 42630968
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  42630906 tgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 8489200 - 8489123
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||| ||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||    
T  8489200 aaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 14069925 - 14069861
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  14069925 tgtcatgttttaatttgttgtttataagaatgatag-ttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 5146582 - 5146503
Alignment:
Q  44 gaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||| ||| || |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  5146582 gaaaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctcc 5146503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 19897295 - 19897228
Alignment:
Q  52 atgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  60 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 228782 - 228716
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||  |||||||||    
T  228782 tgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctcc 228716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 40881867 - 40881792
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||| ||||||||||| || ||  ||||||||||||||||||||| ||||||||    
T  40881867 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 13823214 - 13823150
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||| ||| |||||| || | ||||||| |||||||||||||||||||||||||||||    
T  13823214 tgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  62 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||||| |||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 40882018 - 40882066
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttc 106  Q
    |||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  40882018 tgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 33757651 - 33757614
Alignment:
Q  283 aattgtattgaaattttaaaataattttttattgtgta 320  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  33757651 aattgtatcaaaattttaaaataattttttattgtgta 33757614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 27319668 - 27319716
Alignment:
Q  60 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcct 108  Q
    |||| ||||||||||||||||||||| |||||| ||||| || ||||||    
T  27319668 tcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 33022284 - 33022164
Alignment:
Q  3 tgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttc 102  Q
    |||||||||||| ||||||||||||||||||| | |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33022284 tgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttc 33022185  T
Q  103 gttcctacacaagaatttctc 123  Q
    |||||||||||| ||||||||    
T  33022184 gttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 33022367 - 33022431
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 122  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33022367 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 7789856 - 7789933
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 122  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  7789856 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 21389098 - 21389019
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctccc 125  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  21389098 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctccc 21389019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 21389208 - 21389282
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21389208 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 7789744 - 7789678
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacac 112  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7789744 aaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 29859735 - 29859813
Alignment:
Q  44 gaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 122  Q
    |||||| ||| || ||| ||| ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  29859735 gaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 28472568 - 28472624
Alignment:
Q  66 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 122  Q
    ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  28472568 tttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37568 - 37446
Alignment:
Q  1 tgtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggt 100  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| |||||||||||||||||||||||||||||||| |||| |||||    
T  37568 tgtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggt 37469  T
Q  101 tcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||    
T  37468 tcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 37648 - 37691
Alignment:
Q  61 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37648 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 37994829 - 37994708
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||| || ||| | |||||||||||||| |||||||||||||||||||||||||||    
T  37994829 gtgatcttccatcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggtt 37994730  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  37994729 cgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 44036935 - 44036814
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| ||| ||||||||||||||| | |||||||||||| || ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  44036935 gtgatcttccatcaccactcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggtt 44036836  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||| |||||||| |||||||||    
T  44036835 cgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 2814430 - 2814508
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2814430 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 37994907 - 37994973
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37994907 tgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 37994973  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 14193512 - 14193588
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 397192 - 397269
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| ||||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||    
T  397192 aaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 41539835 - 41539770
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  41539835 tgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 41539970 - 41540034
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  41539970 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

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Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 2814320 - 2814243
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| || ||| ||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  2814320 aaaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 2814243  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 397067 - 397007
Alignment:
Q  62 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  397067 atgttttaatttattgtttgtaagaatgatag-ttaggttcgttcctgcacaagaatttctc 397007  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 14193388 - 14193324
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||  || ||| |||||||||||||||| |||| ||||||||    
T  14193388 tgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 25101795 - 25101746
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcc 107  Q
    |||||| ||||| ||||||||||| ||| |||||||||||||||||||||    
T  25101795 tgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 40587976 - 40588054
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| ||||| || ||||||||||||||||| ||| |||  ||||||  |||  ||||||||||||| ||||||||||    
T  40587976 aaaaaaaatgaaatatcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctc 40588054  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 19804918 - 19804797
Alignment:
Q  2 gtgatcttccatccccattcaccaccaacaccaattatggtggaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggtt 101  Q
    ||||||||||||| |||||||||||||||| || | |||||||||||| || ||  |||| ||||| |||||||||||||||||||| ||||||||||||    
T  19804918 gtgatcttccatcaccattcaccaccaacatcattcatggtggaaaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggtt 19804819  T
Q  102 cgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||||||    
T  19804818 cgttcctacacaagaatttctc 19804797  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 7298712 - 7298635
Alignment:
Q  46 aaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||| |||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  7298712 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 40521215 - 40521280
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40521215 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 40521093 - 40521016
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||| ||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40521093 aaaaattatgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 19805613 - 19805678
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||    
T  19805613 tgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 28948991 - 28949070
Alignment:
Q  44 gaaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcc 124  Q
    |||||| |||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  28948991 gaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctcc 28949070  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 16979604 - 16979681
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||| |||||| ||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16979604 aaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 7298840 - 7298900
Alignment:
Q  62 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  7298840 atgttttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  51 aatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 120  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 46568157 - 46568196
Alignment:
Q  58 tgtcatgttttaatttgttgtttgtaaggatgataggtta 97  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  46568157 tgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 15925 - 15847
Alignment:
Q  45 aaaaataatgacatgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 123  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  15925 aaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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