View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8840_5 (Length: 301)
Name: NF8840_5
Description: NF8840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8840_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 54615581 - 54615874
Alignment:
| Q |
14 |
aataaaaggaattaaaactaaaattagaattggcttaaataactataagaaattatatttaattttttgcttgttgtttaggttgttgttggtgaa---- |
109 |
Q |
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| T |
54615581 |
aataaaaggaattaaaattaaaattagaattggcttaaataactataagaaattatatttaattttttgcttgttgtttaggttgttgttggtgaaattg |
54615680 |
T |
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| Q |
110 |
--attgagaataaagacaagaggatcaaagtaggttctgaggacggagaatccaagatcaccgggaatccgaataccaagaaaaactgtgtagctgaaga |
207 |
Q |
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| T |
54615681 |
aaattgagaataaagacaagaggatcaaaataggttctgaggacggagaatcaaagatcaccgggaatccgaataccaagaagaactgtgtagcagaaga |
54615780 |
T |
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| Q |
208 |
tacttcaaactcaaaggaaaattcaaaagtttctgatgctcaaaagactgattacattcatgttcgagcacgtcgtggccaagccaccgacagt |
301 |
Q |
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| T |
54615781 |
tacttcaaactcaaaggaaaattcaaaagtttctgatgttcaaaagactgattacattcatgttcgagcacgtcgtggccaagccaccgacagt |
54615874 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 26483996 - 26484032
Alignment:
| Q |
255 |
ctgattacattcatgttcgagcacgtcgtggccaagc |
291 |
Q |
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| T |
26483996 |
ctgattacattcatgttcgagcacgtcgtggtcaagc |
26484032 |
T |
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