View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8840_low_1 (Length: 260)
Name: NF8840_low_1
Description: NF8840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8840_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 9377645 - 9377888
Alignment:
| Q |
10 |
gacatcattaggcaaatgagaaaaggctgtagatttgagactaacgaagggtgggtttaagagttgagttttaccacttgagttcttggtaatttgtatc |
109 |
Q |
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| T |
9377645 |
gacagcattaggcaaatgagaaaaggctgtagatttgagactaacgaagggtgggtttaagagttgagttttaccacttgagttcttggtaatttgtatc |
9377744 |
T |
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| Q |
110 |
aaccaaggacgacaacgaattagggtttcttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggtagcaaaatgaagtgt |
209 |
Q |
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| T |
9377745 |
aaccaaggacgacaacgaattagggtttcttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggtagcaaaatgaagtgt |
9377844 |
T |
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| Q |
210 |
tggcgttgttgatgttatcaatgatctcgttgttgttgttgatg |
253 |
Q |
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| T |
9377845 |
tggcgttgttgatgttatcaatgatctcgttgttgttgttgatg |
9377888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 9353465 - 9353703
Alignment:
| Q |
15 |
cattaggcaaatgagaaaaggctgtagatttgagactaacgaagggtgggtttaagagttgagttttaccacttgagttcttggtaatttgtatcaacca |
114 |
Q |
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| T |
9353465 |
cattaggcaaatgagaaaaggctgtagatgtgagacttaagaaaggtggttttaagagttgagttttaccacttgagttttgggtaattcgtatcaacca |
9353564 |
T |
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| Q |
115 |
aggacgacaacgaattagggtttcttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggtagcaaaatgaagtgttggcg |
214 |
Q |
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| T |
9353565 |
aggccgacgacgaattagggtttcttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggtggccaaatgaagtgctggtg |
9353664 |
T |
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| Q |
215 |
ttgttgatgttatcaatgatctcgttgttgttgttgatg |
253 |
Q |
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| T |
9353665 |
ttttcgatgttatcaatgatctcgttgttgttgctgatg |
9353703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 9341419 - 9341511
Alignment:
| Q |
156 |
gtggtggtttgacgaggaagaagctgcgtttggagaggtagcaaaatgaagtgttggcgttgttgatgttatcaatgatctcgttgttgttgt |
248 |
Q |
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| T |
9341419 |
gtggtggtttgacgaggaagatactgcgtttggaaaggtagcagaatagagagtcggtgttgttgatggaatcaatgatctcgttgtcgttgt |
9341511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 9494345 - 9494216
Alignment:
| Q |
60 |
gtgggtttaagagttgagttttaccacttgagttcttggtaatttgtatcaaccaaggacgacaacgaattagggtttcttgttgttgttgttcttgtgg |
159 |
Q |
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| T |
9494345 |
gtgggtttaagatttgggttttgccatttgagtattggcgaattcttaccaaccaaggacgatgacgaattagggttt------gttgttgttcatgtgg |
9494252 |
T |
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| Q |
160 |
tggtttgacgaggaagaagctgcgtttggagaggta |
195 |
Q |
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| T |
9494251 |
tggtttgatgaggaagaaactgcatttggagaggta |
9494216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 9433551 - 9433606
Alignment:
| Q |
139 |
ttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggt |
194 |
Q |
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| T |
9433551 |
ttgtcgttcttgttcttgtgttggtttgatgaggaagaaactgcttttggagaggt |
9433606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 9357397 - 9357442
Alignment:
| Q |
145 |
ttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggag |
190 |
Q |
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| T |
9357397 |
ttgttcttgttgtggtggcttgacgaggaagaaactgcgtttggag |
9357442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 7042151 - 7042207
Alignment:
| Q |
139 |
ttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggta |
195 |
Q |
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| T |
7042151 |
ttgttgttgttgttgttgtggtggtttgatgaggaagaaattatgtttggagaggta |
7042207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 229789 - 229830
Alignment:
| Q |
153 |
cttgtggtggtttgacgaggaagaagctgcgtttggagaggt |
194 |
Q |
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| T |
229789 |
cttgtggtggtttgacgacgaagaaactgtgtttggagaggt |
229830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 18991949 - 18992005
Alignment:
| Q |
139 |
ttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggta |
195 |
Q |
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| T |
18991949 |
ttgttgttgttcttgttgaggtggtttgatgaggaagatgttgtgtttggagaggta |
18992005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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