View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_high_18 (Length: 243)
Name: NF8841_high_18
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_high_18 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 12416037 - 12416272
Alignment:
| Q |
13 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgacatgatctagtgcgt |
108 |
Q |
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| T |
12416037 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgt |
12416136 |
T |
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| Q |
109 |
tattaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
206 |
Q |
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| T |
12416137 |
tattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
12416236 |
T |
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| Q |
207 |
gcaaactgaaaaaacggaaacaagatcaccattctac |
243 |
Q |
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| T |
12416237 |
gcaaactg-aaaaccggaaacaagatcaccattctac |
12416272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 12428097 - 12428332
Alignment:
| Q |
13 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactcc----atatatatcatgacatgatctagtgcgt |
108 |
Q |
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| T |
12428097 |
atcaacaaagatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgt |
12428196 |
T |
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| Q |
109 |
tattaagacacattaggc--nnnnnnnntctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
206 |
Q |
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| T |
12428197 |
tattaagacacattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaa |
12428296 |
T |
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| Q |
207 |
gcaaactgaaaaaacggaaacaagatcaccattctac |
243 |
Q |
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| T |
12428297 |
gcaaactg-aaaaccggaaacaagatcaccattctac |
12428332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 12402229 - 12402298
Alignment:
| Q |
20 |
aagatgttttacaaacaaaaaacagattttgacatg-----ctggtgagtcacaaacaaatactccatat |
84 |
Q |
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| T |
12402229 |
aagatgttttacaaacaacaaacagattttgacatgctggtctggtgagtcacaaacaaatactccatat |
12402298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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