View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_high_20 (Length: 237)
Name: NF8841_high_20
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5938793 - 5939016
Alignment:
| Q |
1 |
aatcttattctagctttttatattggagtattgatgcctgacgcaattttttctggtctcatattcatataataaacaaacaactcattagattctgagg |
100 |
Q |
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| T |
5938793 |
aatcttattctagctttttatattggagtattgatgcctgacgcaattttttctggtctcatattcatataataaacaaacaactcattagattctgagg |
5938892 |
T |
|
| Q |
101 |
taagttataaccttcttccccttcgtccataaatcataacaaattgaactcagaaaaattcaagttttatacgttttaggttgattttttgggctaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5938893 |
taagttataaccttcttccccttcgtccataaatcataacaaattgaactcagaaaaattcaagttttatacgttttaagttgattttttgggctaaatt |
5938992 |
T |
|
| Q |
201 |
ttacctgaaacaaagacaaaaatg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
5938993 |
ttacctgaaacaaagacaaaaatg |
5939016 |
T |
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