View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8841_low_14 (Length: 335)
Name: NF8841_low_14
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_14 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 335
Target Start/End: Original strand, 34829254 - 34829583
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34829254 |
aatgaaatggtcatcaatattaaaggggttaacacctgacattccgatccaagacctgatatgatgccacaatgtactgaaagtggcacaatgaataaac |
34829353 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
34829354 |
aagtgaggcgcagactcttccttgccgcaccctgtaacacacataactacttcggcattgattactccacgtcttagaagattattcttaatcgacaacc |
34829453 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagt |
305 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34829454 |
tgtcccgcaacaaccgccaagcaaagatggagaccttcagcagcacctgcttatgccagataagatctcccatagtaccatatggaggatcagcctgagt |
34829553 |
T |
|
| Q |
306 |
tgttagttgtttatagacatctctcacagt |
335 |
Q |
| |
|
| | ||||||| ||||||| |||||||||| |
|
|
| T |
34829554 |
tttcagttgttgatagacacctctcacagt |
34829583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 332
Target Start/End: Complemental strand, 40513828 - 40513685
Alignment:
| Q |
189 |
attctcagtcgacaacttgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatct |
288 |
Q |
| |
|
||||| ||||| |||| | || || ||||| | ||||||||| ||||| ||||| ||||||||||| |||||| ||||||| || || || | | ||||| |
|
|
| T |
40513828 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtcgccaatggaagcatct |
40513729 |
T |
|
| Q |
289 |
ggaggatcagcctgagttgttagttgtttatagacatctctcac |
332 |
Q |
| |
|
||||| | | ||||| ||| ||||||| |||| |||| ||||| |
|
|
| T |
40513728 |
ggaggttgaacctgaactgtaagttgttgataggcatcgctcac |
40513685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 53941349 - 53941409
Alignment:
| Q |
201 |
caacttgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgc |
261 |
Q |
| |
|
|||| |||| |||| ||||||||| ||||| ||||| |||||||| || |||||||||||| |
|
|
| T |
53941349 |
caacctgtcccgcagcaaccgccatgcaaaaatggataccttcagaggaacctgcttatgc |
53941409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 26510662 - 26510333
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26510662 |
aatgaaatggtcatcgatattaaaggggtcaacacctgacattccgatccaagacctgatatgatgccacaatgtaccgaaaatggcacaatgaataaac |
26510563 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||||||||||| | ||||||||||| ||||| |||| |
|
|
| T |
26510562 |
aagtgaggcgcagactcttccttgccgcatcctgtaacacacataactgcttcggtattgattactccacgtctcataagattattcttagtcggcaacc |
26510463 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagt |
305 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26510462 |
tgtcccgcaacaaccgtcaagcaaagatggagaccttcagcggcacttgcttatgccagataagatctcccatagtaccatctggaggatcagtctgagt |
26510363 |
T |
|
| Q |
306 |
tgttagttgtttatagacatctctcacagt |
335 |
Q |
| |
|
||| ||||||||||||| | |||||||||| |
|
|
| T |
26510362 |
tgtcagttgtttatagaaacctctcacagt |
26510333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 33150830 - 33150942
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||| || |||||||| || |||||||| |
|
|
| T |
33150830 |
aatgaaatggtcatcaatattaagggggtcggcacctgacattccgatccaagacctgataagatgccacaatgagccaaaagtggcgcagtgaataaat |
33150929 |
T |
|
| Q |
106 |
aagtgaggcgcag |
118 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
33150930 |
aaatgagacgcag |
33150942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 5808732 - 5808801
Alignment:
| Q |
181 |
agaagattattctcagtcgacaacttgtctcgcaacaaccgccaagcaaagatggagaccttcagcggca |
250 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
5808732 |
agaagattattcttagtcggcaacctgtctcgcaacaaccgccaagcaaagatagaaacctttagcggca |
5808801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 13868120 - 13867794
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||| ||| | | ||||||||||| | |||||| |||||| | |||||| || ||||| ||||| |||||||| | ||| |
|
|
| T |
13868120 |
aatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccataaagtaccaaaagtagcacaatgtagaaat |
13868021 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
|| |||| |||||||| || || | ||||| |||||||||| ||| ||| || || | ||||| | ||||| | ||||| ||||| |||| |
|
|
| T |
13868020 |
aaatgagaaacagactctgccatgccacacccagtaacacacaatgctgcctcgccaacaatgataccacgccggagaaggtgattcttagtcggcaacc |
13867921 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagt |
305 |
Q |
| |
|
| || || ||||| | ||||||||| ||||| ||||| ||||||||||| |||||| ||||||| || || || | | |||||||||| | | |||||| |
|
|
| T |
13867920 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtcgccaatggaagcatctggaggttgaacctgagc |
13867821 |
T |
|
| Q |
306 |
tgttagttgtttatagacatctctcac |
332 |
Q |
| |
|
||| ||||||| |||| ||||| |||| |
|
|
| T |
13867820 |
tgtaagttgttgataggcatctatcac |
13867794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 45795275 - 45795385
Alignment:
| Q |
222 |
ccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagttgttagttgtttatag |
321 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| |||||| | ||||| ||||| || | | |||||||||| | | |||||| ||| ||||||| |||| |
|
|
| T |
45795275 |
ccaagcaaaaatggaaaccttaagcggcacctgattatgccaaataaggtctccaatggaagcatctggaggttgaacctgagctgtcagttgttgatag |
45795374 |
T |
|
| Q |
322 |
acatctctcac |
332 |
Q |
| |
|
||| ||||||| |
|
|
| T |
45795375 |
acacctctcac |
45795385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 52691507 - 52691573
Alignment:
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatc |
272 |
Q |
| |
|
|||| |||| ||||||||| ||||| ||||| |||||||| || |||||||||||| ||| |||||| |
|
|
| T |
52691507 |
tgtcccgcagcaaccgccatgcaaaaatggataccttcagaggaacctgcttatgccagacaagatc |
52691573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 27393752 - 27393679
Alignment:
| Q |
196 |
gtcgacaacttgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataag |
269 |
Q |
| |
|
||||||||| |||||||||| || | |||||||| || |||||||||| || |||||||||||| ||||||| |
|
|
| T |
27393752 |
gtcgacaacctgtctcgcaaaaatcaccaagcaagaatagagaccttcaagggtacctgcttatgccagataag |
27393679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 11196186 - 11196485
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||| | ||| |||||||||||| |||||||||||||||| |||||||||||| ||| |||||||| || |||||||| |
|
|
| T |
11196186 |
aatgaaatggtcatcaatattaaggaggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaat |
11196285 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
|| |||| |||| |||| || | ||||||||||||||||||||| ||| ||| ||||||||| ||||| |||||||||| |||| ||||| |||| |
|
|
| T |
11196286 |
aaatgagacgcaatctctgccataccgcaccctgtaacacacataactgcctcgccattgattatgccacgccttagaagatggttcttagtcggcaacc |
11196385 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagt |
305 |
Q |
| |
|
| ||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
11196386 |
tatctcgcaacaatcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccagataagatctcctatagtaacatctggaggttcagcctgagt |
11196485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 38 - 308
Target Start/End: Original strand, 32624221 - 32624491
Alignment:
| Q |
38 |
cacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaacaagtgaggcgcagactcttccttgtcgcaccc |
137 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||| ||| |||||||| ||||||||||| || |||| | || ||||||| | |||| || |
|
|
| T |
32624221 |
cacctgacattccaatccaagacctgataagatgccacaatgaaccaaaagtggcgcaatgaataaataaatgagatgtagtctcttccataccgcatcc |
32624320 |
T |
|
| Q |
138 |
tgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaacttgtctcgcaacaaccgccaagcaaagatggag |
237 |
Q |
| |
|
||| ||||||||| |||| ||| | ||||||| ||||| |||||||||| |||| ||||| |||| | |||| ||| || |||||| |||| ||||| |
|
|
| T |
32624321 |
tgtgacacacatacatgcctcgccgttgattatgccacgccttagaagatggttcttagtcggcaacctatctctcaataatcgccaaacaaaaatggaa |
32624420 |
T |
|
| Q |
238 |
accttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagttgt |
308 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||| || | | |||||||| || || |||||||| |
|
|
| T |
32624421 |
accttcagcggcacctgcttatgccatataaaatctcccaaaggaacgtctggaggttccgcttgagttgt |
32624491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 144329 - 144231
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaa |
104 |
Q |
| |
|
||||| |||| ||| |||| |||| |||| | ||||||||||| ||||||||||||||||| |||||||||| | ||| ||||||| ||||||||||| |
|
|
| T |
144329 |
aatgaaatggtcattaatagtaaaagggtcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagtggtgcaatgaataaa |
144231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 20543920 - 20544222
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||| || |||||||| |
|
|
| T |
20543920 |
aatgaaatggtcatcaatattaaaggggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaat |
20544019 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
|| |||| | || ||||||| | |||||||||| ||||||||| || ||| | ||||||| ||||| |||||||||| |||| ||||| |||| |
|
|
| T |
20544020 |
aaatgagatgtagtctcttccataccgcaccctgtgacacacatacttgtctcgccgttgattatgccacgccttagaagatggttcttagtcggcaacc |
20544119 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagt |
305 |
Q |
| |
|
| |||||||| || ||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||||||| || | | |||||||| || |||||||| |
|
|
| T |
20544120 |
tatctcgcaataatcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccatataagatctcccaaaggaacgtctggaggttccgcctgagt |
20544219 |
T |
|
| Q |
306 |
tgt |
308 |
Q |
| |
|
||| |
|
|
| T |
20544220 |
tgt |
20544222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 43517035 - 43516709
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||| ||| | | ||||||||||| | |||||| |||||||| ||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
43517035 |
aatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctgataaaatgccacaaagtaccgaaagtagcacaatgtataaat |
43516936 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
|| |||| |||||| | | || ||||||| |||||||||| | | ||| || ||| | ||||| | || |||| ||||| ||||| |||| |
|
|
| T |
43516935 |
aaatgagaaacagactatgtcatgccgcacccagtaacacacaatgctacctcgccaacgatgatgccacgccggaggagatgattcttagtcggcaacc |
43516836 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagt |
305 |
Q |
| |
|
| || | ||||| | ||||||||| ||||| ||||| ||||||||||| |||||| ||||||||||||| || ||| |||||||||| | | |||||| |
|
|
| T |
43516835 |
tatcccataacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataagatctccaatggtagcatctggaggttgaacctgagc |
43516736 |
T |
|
| Q |
306 |
tgttagttgtttatagacatctctcac |
332 |
Q |
| |
|
||| |||||| ||||||| ||||||| |
|
|
| T |
43516735 |
tgtcggttgttgatagacacctctcac |
43516709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 27300015 - 27300086
Alignment:
| Q |
21 |
aatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggc |
92 |
Q |
| |
|
||||||| ||||| |||||||| ||| |||||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
27300015 |
aatattaggggggtcaacacctggtattccgatccaacatctgatataatgccacaatgtaccgaaagtggc |
27300086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 19120107 - 19120178
Alignment:
| Q |
201 |
caacttgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatc |
272 |
Q |
| |
|
|||| |||| |||| ||||||||||||||| ||||| ||||||| || |||||||||||| ||| |||||| |
|
|
| T |
19120107 |
caacctgtcccgcagcaaccgccaagcaaaaatggaaaccttcataggaacctgcttatgccagacaagatc |
19120178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 51 - 335
Target Start/End: Original strand, 6245007 - 6245291
Alignment:
| Q |
51 |
gatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaacaagtgaggcgcagactcttccttgtcgcaccctgtaacacacata |
150 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||| | || ||||||||| || |||| |||| |||||| | |
|
|
| T |
6245007 |
gatccaacacctgatatgatgccacaatgtaccgaaagtggcgcaatgaagaaataagtgtgtcgtggactcttccatgccgcaacctgcaacacataac |
6245106 |
T |
|
| Q |
151 |
aatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaacttgtctcgcaacaaccgccaagcaaagatggagaccttcagcggca |
250 |
Q |
| |
|
|||||| |||| ||| || || || || ||||||||||||| |||| |||| | ||||||| ||| |||||||||||||| || ||||| || |||| |
|
|
| T |
6245107 |
gctgcttcagcatcgatcacgccgcgcctcagaagattattcttagtcagcaacctatctcgcatcaatcgccaagcaaagatagaaacctttagtggca |
6245206 |
T |
|
| Q |
251 |
cctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagttgttagttgtttatagacatctctcacagt |
335 |
Q |
| |
|
||||||||||| | |||||||||||| ||||| ||||| ||||| ||||||| |||| ||||||| ||||||| |||||||||| |
|
|
| T |
6245207 |
cctgcttatgccaaataagatctcccgtagtaacatcttgaggaacagcctgcattgtcagttgttcatagacacctctcacagt |
6245291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 9510646 - 9510946
Alignment:
| Q |
21 |
aatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaacaagtgaggcgcagac |
120 |
Q |
| |
|
||||||| ||||| |||||||| ||| |||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| | ||||||| |
|
|
| T |
9510646 |
aatattaggggggtcaacacctggtattccgatccaacacctgatatgatgccacaatgtactgaaagtggcgcaatgaagaaataagtgtgtcgcagac |
9510745 |
T |
|
| Q |
121 |
tcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaacttgtctcgcaacaacc |
220 |
Q |
| |
|
|||||| || | || |||| |||||| | |||||| | || ||| || | ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
9510746 |
tcttccatgccccaacctgcaacacataacgctgcttcagtatcgatcacgc--------------ttattcttagtcgacaacctgtctcgcaacaacc |
9510831 |
T |
|
| Q |
221 |
gccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagttgttagttgtttata |
320 |
Q |
| |
|
| ||||||||||| || ||||| | |||||||||||||||| |||||||||||||| ||||| ||||| |||||||||| || ||||| ||||||| ||| |
|
|
| T |
9510832 |
gtcaagcaaagatagaaacctttaacggcacctgcttatgccagataagatctcccgtagtaacatcttgaggatcagcttgcgttgtcagttgttcata |
9510931 |
T |
|
| Q |
321 |
gacatctctcacagt |
335 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
9510932 |
gacacctctcacagt |
9510946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 25900869 - 25900934
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatg |
71 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
25900869 |
aatgaaatggtcatcaatattaaaggggtcaacacctgacattccgatccaagacctaatatgatg |
25900934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 15439203 - 15439267
Alignment:
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataaga |
270 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||| || ||||| |||||| | |||||| |
|
|
| T |
15439203 |
tgtcccgcaacaatcgccaagcaaaaatggagaccttcatgggtacctgtttatgccacataaga |
15439267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 15530507 - 15530571
Alignment:
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataaga |
270 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||||| || ||||| |||||| | |||||| |
|
|
| T |
15530507 |
tgtcccgcaacaatcgccaagcaaaaatggagaccttcatgggtacctgtttatgccacataaga |
15530571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 26855548 - 26855850
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| ||| ||||||||| |||| | ||||||||||| ||||| ||||||||||| |||||||||| | ||| ||||||| ||||||||||| |
|
|
| T |
26855548 |
aatgaaatggtcattaatattaaaagggtcagcacctgacattccgatcaaagacctgataagatgccacaaagaaccaaaagtggtgcaatgaataaaa |
26855647 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
| |||| | || ||||||| | |||||||||| ||||||||| | || ||| ||||||| ||||| || | ||||| ||||| ||||| |||| |
|
|
| T |
26855648 |
agatgagatgtagtctcttccataccgcaccctgtgacacacatacaagcctcgctgttgattatgccacgcctaaaaagatgattcttagtcggcaacc |
26855747 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctcccatagtaccatctggaggatcagcctgagt |
305 |
Q |
| |
|
| || ||||| || ||||||||||| ||||| ||||| |||||||||||||||||| | ||||| ||||||| || | | |||||||| ||||| ||||| |
|
|
| T |
26855748 |
tatcacgcaataatcgccaagcaaaaatggaaaccttgagcggcacctgcttatgccatataaggtctcccaaaggaacgtctggaggttcagcttgagt |
26855847 |
T |
|
| Q |
306 |
tgt |
308 |
Q |
| |
|
||| |
|
|
| T |
26855848 |
tgt |
26855850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 35213468 - 35213610
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||| ||| | ||||||||||||| | |||||| |||||| | ||||||||| ||| ||||||| |||||||| ||||| |
|
|
| T |
35213468 |
aatgaaatggtcatcaatattaaggggatcaacacctgacattccaatccaacacctgacaaaatgccacaaagtaacgaaagtagcacaatgtataaat |
35213567 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacaca |
148 |
Q |
| |
|
|| || | |||||||| || || ||||||| |||||||||| |
|
|
| T |
35213568 |
aaatgggaaacagactctgccatgccgcacccagtaacacaca |
35213610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 21368223 - 21367956
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| |||||||||||| |||| | ||||||||||| ||||||||||||||||| |||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
21368223 |
aatgaaatggtcatcaatattaagagggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcaatgaataaaa |
21368124 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
| | || | || ||||||| | |||||||||| ||||| || |||| ||| | ||||||| ||||| ||||| |||| |||| ||||| |||| |
|
|
| T |
21368123 |
agataagatgtagtctcttccataccgcaccctgtgacacaattacatgcctcgccgttgattatgccacgccttaggagatggttcttagtcggcaacc |
21368024 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatct |
273 |
Q |
| |
|
| |||| ||| || ||||||| ||| ||||| |||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
21368023 |
tatctctcaataatcgccaagaaaaaatggaaaccttcagcggcacctacttatgccatataagatct |
21367956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 14687313 - 14687042
Alignment:
| Q |
6 |
aatgagatggacatcaatattaaaggggttaacacctgacatttcgatccaagacctgatatgatgccacaatgtaccgaaagtggcacaatgaataaac |
105 |
Q |
| |
|
||||| |||| | |||||| |||| |||| | ||||||||||| ||||||||||||||||| |||||||||| | ||| ||||||| ||||||||||| |
|
|
| T |
14687313 |
aatgaaatgggcctcaatagtaaaagggtcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagtggtgcaatgaataaaa |
14687214 |
T |
|
| Q |
106 |
aagtgaggcgcagactcttccttgtcgcaccctgtaacacacataaatgcttcggcattgattactccacgtcttagaagattattctcagtcgacaact |
205 |
Q |
| |
|
| |||| | || ||||||| |||||||||| ||||||||| | | || ||||||| ||||| || | ||||| ||||| ||||| |||| |
|
|
| T |
14687213 |
agatgagatgtagtctcttccacaccgcaccctgtgacacacatacaaacctcactgttgattatgccacgcctaaaaagatgattcttagtcggcaacc |
14687114 |
T |
|
| Q |
206 |
tgtctcgcaacaaccgccaagcaaagatggagaccttcagcggcacctgcttatgctagataagatctccca |
277 |
Q |
| |
|
| || ||||| || ||||||||||| ||||| ||||| |||||||||||||||||| | ||||| ||||||| |
|
|
| T |
14687113 |
tatcacgcaataatcgccaagcaaaaatggaaaccttaagcggcacctgcttatgccatataaggtctccca |
14687042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University