View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_15 (Length: 327)
Name: NF8841_low_15
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_15 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 21843890 - 21843617
Alignment:
| Q |
13 |
ggacatcatagagccagacaaaaagaaccggctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataaaaaggttaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843890 |
ggacatcatagagccagacaaaaagaaccggctaaatgcagatagcagaacagcataacaataaaaatcaaccaaggatttagcaacataaaaaggttaa |
21843791 |
T |
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| Q |
113 |
nnnnnnnnncaaatacccattattagaaacnnnnnnncc-tatcagaaatcaacnnnnnnnngtcactacataaactcaatgaagacccaaataatcaaa |
211 |
Q |
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||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21843790 |
tttttttt-caaatacccattattagaaacaaaaaaaccctatcagaaatcaacaaaaaaa-gtcactacataaactcaatgaagacccaaataatcaaa |
21843693 |
T |
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| Q |
212 |
acaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
287 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843692 |
acaacaaaaacataatctagatctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
21843617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 19961 - 20235
Alignment:
| Q |
12 |
tggacatcatagagccagacaaaaagaaccggctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataaaaaggtta |
111 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19961 |
tggacatcatagagccagacaaaaagaaccagctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataacaaggtta |
20060 |
T |
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| Q |
112 |
annnnnnnnncaaatacccattattagaaacnnnnnnncc-tatcagaaatcaacnnnnnnnngtcactacataaactcaatgaagacccaaataatcaa |
210 |
Q |
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| ||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20061 |
atttttttt-caaatacccattattagaaacaaaaaaaccctatcaaaaatcaacaaaaaaa-gtcactacataaactcaatgaagacccaaataatcaa |
20158 |
T |
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| Q |
211 |
aacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20159 |
aacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
20235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 10660190 - 10660080
Alignment:
| Q |
174 |
gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatc |
273 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10660190 |
gtcagtacataaactcaatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatc |
10660091 |
T |
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| Q |
274 |
aaaagggaatt |
284 |
Q |
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||||||||||| |
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| T |
10660090 |
aaaagggaatt |
10660080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 10874335 - 10874225
Alignment:
| Q |
174 |
gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatc |
273 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10874335 |
gtcagtacataaactcaatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatc |
10874236 |
T |
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| Q |
274 |
aaaagggaatt |
284 |
Q |
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||||||||||| |
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| T |
10874235 |
aaaagggaatt |
10874225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 10660660 - 10660573
Alignment:
| Q |
25 |
gccagacaaaaagaaccggctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataaaaaggttaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
10660660 |
gccagacaaaaagaaccggctaaatgcagatagcataatagcacaacaataaaaaccaaccaaggatttaacaacataaaaaggttaa |
10660573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 10874805 - 10874718
Alignment:
| Q |
25 |
gccagacaaaaagaaccggctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataaaaaggttaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
10874805 |
gccagacaaaaagaaccggctaaatgcagatagcataatagcacaacaataaaaaccaaccaaggatttaacaacataaaaaggttaa |
10874718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 12818505 - 12818615
Alignment:
| Q |
174 |
gtcactacataaactcaatgaagacccaaataatcaaaac--aacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaa |
271 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |
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| T |
12818505 |
gtcactacataaactcaatgaagacccaaacaatcaaaacaaaaaaaaaacgtaatctatgtttaa--agttatcttcaaagaatacccaaaaaaaagaa |
12818602 |
T |
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| Q |
272 |
tcaaaagggaatt |
284 |
Q |
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||||||||||||| |
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| T |
12818603 |
tcaaaagggaatt |
12818615 |
T |
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