View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8841_low_19 (Length: 302)
Name: NF8841_low_19
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_19 |
 | |
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| [»] scaffold0726 (1 HSPs) |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 45099581 - 45099293
Alignment:
| Q |
1 |
caccaaaattttgtcttcaattccaccaaatttaaagaaaataaaagcaacaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45099581 |
caccaaaattttgtcttcaattccaccaaatttaaataaaataaaagcaacagaagaaccattcatctctatttcaaagtaaagtactttaaacatagaa |
45099482 |
T |
|
| Q |
101 |
gcaaacatacacagacacaaacacacacttat----tttatttactaaccaaatcata-tttttgttacatttaaccaaatatatttagtaaggtataaa |
195 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
45099481 |
gcacacatacacagacacaaacacatacttattgtctttatttactaacccaatcatattttttgttacatttaaccaaatatatttagaaaggtataaa |
45099382 |
T |
|
| Q |
196 |
aaatgcatcagctttaataatgacaatagtaaacaaaagacaattaaaacatgatcacgtatattaacaaatgatacaaaaaacttctt |
284 |
Q |
| |
|
||||||| || | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45099381 |
aaatgcaccaacattaataatgacagtaataaacaaaagacaattaaaacatgatcacgtatattaacaaatgatctaaaaaacttctt |
45099293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 284
Target Start/End: Complemental strand, 19110564 - 19110306
Alignment:
| Q |
38 |
aaaataaaagcaacaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaag---------caaacatacacagacacaaacacacac |
128 |
Q |
| |
|
|||| |||||| ||| |||| |||||||||||| |||||| ||||||||||||||||||||| || |||||| ||||||||||||||||| |
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|
| T |
19110564 |
aaaaaaaaagctacagaagagtcattcatctctatttcaaattaaagtactttaaacatagaaaaacttaaaacacacatacgcagacacaaacacacac |
19110465 |
T |
|
| Q |
129 |
ttatttt----atttactaaccaaatcatattttt--gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaat |
222 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||| || | |||||||||||| | |
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|
| T |
19110464 |
ttattgtcttcatttactaaccaaatcatatttttttgttacatttaaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgacagt |
19110368 |
T |
|
| Q |
223 |
agtaaacaaaagacaattaaaacatgatcacgtatattaacaaatgatacaaaaaacttctt |
284 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
19110367 |
agtaaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaaaaaattctt |
19110306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 41 - 258
Target Start/End: Complemental strand, 12228007 - 12227791
Alignment:
| Q |
41 |
ataaaagcaacaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaagcaaacatacacagacacaaacacacacttatt----tta |
136 |
Q |
| |
|
|||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||| |
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| T |
12228007 |
ataaaagcaacagaagaaccattcatctcgatttcaaagtaaagtactttaaacatacaagcacacatacaca------aacacacacttattgtcttta |
12227914 |
T |
|
| Q |
137 |
tttactaaccaaatcatat-ttttgttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaaga |
235 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||| |||||||||||||| |
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|
| T |
12227913 |
tttactaaccaaatcatatattttgttacatttaaccaaatatatttagaaaggtataaaaaatgcaccaacattaataatgacattagtaaacaaaaga |
12227814 |
T |
|
| Q |
236 |
caattaaaacatgatcacgtata |
258 |
Q |
| |
|
|||||||||||||||||| |||| |
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| T |
12227813 |
caattaaaacatgatcacatata |
12227791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 60 - 284
Target Start/End: Original strand, 18716885 - 18717120
Alignment:
| Q |
60 |
cattcatctctaattcaaagtaaagtactttaaacatagaagcaa---------acatacacagacacaaacacacacttatttt----atttactaacc |
146 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||||| | ||||||||||| |
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|
| T |
18716885 |
cattcatctctatttcaaattaaagtactttaaacatagaaacacttaaaacacacatacacagacgcaaacacacacttattgtcttcatttactaacc |
18716984 |
T |
|
| Q |
147 |
aaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaagacaattaaaac |
245 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||| ||| ||||||||||||||||| || | |||||||||||| |||||||||||||| |||||||| |
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|
| T |
18716985 |
aaatcatattttttgttaaatttaaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgacagtagtaaacaaaagagaattaaaaa |
18717081 |
T |
|
| Q |
246 |
atgatcacgtatattaacaaatgatacaaaaaacttctt |
284 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18717082 |
atgatcacgtatattaacaaatgacccaaaaaacttctt |
18717120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 60 - 284
Target Start/End: Original strand, 14465054 - 14465287
Alignment:
| Q |
60 |
cattcatctctaattcaaagtaaagtactttaaacatagaagca-----aacataca--cagacacaaacacacacttatttt----atttactaaccaa |
148 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||| || || |||| ||| ||||| |||||||||||||||| | ||||||||||||| |
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|
| T |
14465054 |
cattcatctctatttcaaattaaagtactttaaacatataaacacttaaaacacacattcagactcaaacacacacttattgtcttcatttactaaccaa |
14465153 |
T |
|
| Q |
149 |
atcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaagacaattaaaacat |
247 |
Q |
| |
|
||||||||||| ||||||||| |||| |||| ||| ||||||||||||||||| || | |||||||||||| |||||||||||||| |||||||| || |
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| T |
14465154 |
atcatattttttgttacatttgaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgacagtagtaaacaaaagaaaattaaaaaat |
14465250 |
T |
|
| Q |
248 |
gatcacgtatattaacaaatgatacaaaaaacttctt |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14465251 |
gatcacgtatattaacaaatgacccaaaaaacttctt |
14465287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 43 - 284
Target Start/End: Complemental strand, 7963367 - 7963114
Alignment:
| Q |
43 |
aaaagcaacaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaagca-----aaca----tacacagacacaaacacacacttatt |
133 |
Q |
| |
|
|||||| ||| |||| |||||||||||| |||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
7963367 |
aaaagctacagaagagtcattcatctctatttcaaattaaagtactttaaacatagaaacacttacaacacgcatacacagacacaaacacacacttatt |
7963268 |
T |
|
| Q |
134 |
tt----atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaa-tgcatcagctttaataatgacaatagtaa |
227 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||||||||||| |||| ||| ||||||||||||| |||| || | |||||||||||| |||||| |
|
|
| T |
7963267 |
gtcttcatttactaaccagatcatattttttgttacatttaaccatatat---tagaaaggtataaaaaaatgcaccaacattaataatgacagtagtaa |
7963171 |
T |
|
| Q |
228 |
acaaaagacaattaaaacatgatcacgtatattaacaaatgatacaaaaaacttctt |
284 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7963170 |
acaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaaaaacttctt |
7963114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 4231 - 4053
Alignment:
| Q |
105 |
acatacacagacacaaacacacacttatttt----atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||| |||| ||||| ||| |||||||||||||| |
|
|
| T |
4231 |
acatacacagacacaaacacacacttactgtcttcatttactaaccaaatcatattttttgttacattaaacctaatat---tagaaaggtataaaaaat |
4135 |
T |
|
| Q |
200 |
gcatcagctttaataatgacaatagtaaacaaaagacaattaaaacatgatcacgtatattaacaaatgatacaaaaaactt |
281 |
Q |
| |
|
||| || | |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
4134 |
gcaccaacattaataatgacagtagtaaacaaaagagaattaaaaaatgatcacgtatattaacaaatgacccaaaaaactt |
4053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 8043 - 8271
Alignment:
| Q |
50 |
acaaaagaaccattcatctctaattcaaagtaaagtactttaaacatagaagca-----aaca----tacacagacacaaacacacacttatttt----a |
136 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||| |||||| |||||| || |||| |||||||||||||||||||||||||| | | |
|
|
| T |
8043 |
acaaaagagtcattcatctctatttcaaattaaagtaatttaaatatagaaacacttaaaacacatatacacagacacaaacacacacttattgtcttca |
8142 |
T |
|
| Q |
137 |
tttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaaga |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
8143 |
tttactaaccaaatcatattttttgttacatttaaccatatat---tagaaaggtgtaaaaaatgcaccaacattaataatgacagtagtaaacaaaaga |
8239 |
T |
|
| Q |
236 |
caattaaaacatgatcacgtatattaacaaat |
267 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
8240 |
taattaaaaaatgatcacgtatattaacaaat |
8271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 278
Target Start/End: Complemental strand, 29467183 - 29466954
Alignment:
| Q |
60 |
cattcatctctaattcaaagtaaagtactttaaacatagaagc---------aaacatacacagacacaaacacacacttatttt----atttactaacc |
146 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||| || | | ||||||||||||||||| ||||||||||| | ||||||||| | |
|
|
| T |
29467183 |
cattcatctctatttcaaattaaagtactttaaacatataaacccttaaaacacacatacacagacacaaaaacacacttattgtcttcatttactaatc |
29467084 |
T |
|
| Q |
147 |
aaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaagacaattaaaac |
245 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||| || ||||||||||||||||| || | |||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
29467083 |
aaatcatattttttgttatatttaaccatatat---taaaaaggtataaaaaatgcaccaacattaacaatgacagtagtaaacaaaagagaattaaaaa |
29466987 |
T |
|
| Q |
246 |
atgatcacgtatattaacaaatgatacaaaaaa |
278 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
29466986 |
atgatcacgtatattaacaaatgacccaaaaaa |
29466954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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