View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_20 (Length: 291)
Name: NF8841_low_20
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 8182134 - 8182395
Alignment:
| Q |
18 |
ccatgctggcaactatgcataatgtccttgatcatataactagctggcccccatgacacaaaccatttgtactagcttgtaatcttgtgcatgtacttca |
117 |
Q |
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| T |
8182134 |
ccatgctggcaactatgcataatgtccttgatcatataactagctggcccccatgacacaaaccatttgtactagcttgtaatcttgtgcatgtacttca |
8182233 |
T |
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| Q |
118 |
ctggaattgagcatcaaagtagtgtttgatttggtgtcatgagggtcctgaattactcaataatctttaagtgttgggtaaacatacatgaagtggtgac |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8182234 |
ctggaattgagcatcagagtagtgtttgatttggtgtcatgagggtcctgaattactcaataatctttaagtgttgggtaaacatacatgaagtggtgac |
8182333 |
T |
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| Q |
218 |
gcacgtgggttgatatgttagtgtaggcttaagactttgaagtgtgctcctctatcgatctc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8182334 |
gcacgtgggttgatatgttagtgtaggcttaagactttgaagtgtgctcctctatcgatctc |
8182395 |
T |
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