View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_28 (Length: 250)
Name: NF8841_low_28
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 34044862 - 34044633
Alignment:
| Q |
3 |
gttgccaattgcaaccgttacttcatcatcaggcaactcctccgcctgcaccaacacctgcacccgcgccttcccctttcccatgtcctgtactcgcttg |
102 |
Q |
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| T |
34044862 |
gttgccacttgcaaccgttacttcatcatcaggcaactcctccgcctgcaccaacacctgcacccgcgccttcccctttctcatgtcctgtacttgcttg |
34044763 |
T |
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| Q |
103 |
atcaacccagtccactcttcgtcttcatcttctttggatgttccagcttctttaatttcctcttggggtactgccacaactttacttgtagtggagcgag |
202 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34044762 |
atcaacccagtccactcttcgtcttcattttctttggatgttccagcttctttaatttcctcttggggtactgccgcaactttacttgtagtggagcgag |
34044663 |
T |
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| Q |
203 |
ttcctggttcagtgctctcaatctggatgt |
232 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34044662 |
ttcctggttcagtgctctcaatctggatgt |
34044633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 4044730 - 4044959
Alignment:
| Q |
3 |
gttgccaattgcaaccgttacttcatcatcaggcaactcctccgcctgcaccaacacctgcacccgcgccttcccctttcccatgtcctgtactcgcttg |
102 |
Q |
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||||||| |||||| | | |||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
4044730 |
gttgccacttgcaagcctaacttcatcatcaagcaactcctccgcttgcaccaacacctgcacccgagccttcctctttcccatgtcctgtacttgcttg |
4044829 |
T |
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| Q |
103 |
atcaacccagtccactcttcgtcttcatcttctttggatgttccagcttctttaatttcctcttggggtactgccacaactttacttgtagtggagcgag |
202 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||| ||||||||||| |||||||||| |
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| T |
4044830 |
atcaacccagtccactcttcgtcttcatcttcttcggatgttccagcttctttgatttcctcttcagggactgccgtaactttacttgaggtggagcgag |
4044929 |
T |
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| Q |
203 |
ttcctggttcagtgctctcaatctggatgt |
232 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
4044930 |
ttcctgattcagtgctctcaatctggatgt |
4044959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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