View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_33 (Length: 243)
Name: NF8841_low_33
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_33 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 178245 - 178487
Alignment:
| Q |
1 |
actagaagagttgaaagaggactccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttttaccatcacatttgaaatatgtgttcctt |
100 |
Q |
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| T |
178245 |
actagaagagttgaaagaggactccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttttaccatcacatgtgaaatatgtgttcctt |
178344 |
T |
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| Q |
101 |
gaagacggtggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcgatag |
200 |
Q |
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| T |
178345 |
gaagatggtggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcgatag |
178444 |
T |
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| Q |
201 |
ggtggaaattatccgatttgaaagggagatgtccatctcattg |
243 |
Q |
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| T |
178445 |
ggtggaaattatccgatttgaaagggatatgtccatcttattg |
178487 |
T |
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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 20171874 - 20172083
Alignment:
| Q |
8 |
gagttgaaagaggactccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttttaccatcacatttgaaatatgtgttccttgaagacg |
107 |
Q |
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| T |
20171874 |
gagttgaaagatgagtccaaggaagaatccaaagttggtgatgccaaggttgaactaaaagtcttaccatcacacttgaagtacgttttttttgaaaatg |
20171973 |
T |
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| Q |
108 |
gtggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcgatagggtggaa |
207 |
Q |
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| T |
20171974 |
atggtaccaaaccggttaacattagtagctccttgtccgtcaaagaggaaaaaaaattggtcgaagtcctcaagagtaataaagaagcaataggttggaa |
20172073 |
T |
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| Q |
208 |
attatccgat |
217 |
Q |
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| T |
20172074 |
gttgtccgat |
20172083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 17787509 - 17787590
Alignment:
| Q |
53 |
aaggttgaattgaaagttttaccatcacatttgaaatatgtgttccttgaagacggtggtaccaaaccggtgatcattagta |
134 |
Q |
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| T |
17787509 |
aaggttgaaatgaaggttttgtcgtcacatctaaaatatgtatgccttgaagaggatggcacaaaaccggtgatcattagta |
17787590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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