View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8841_low_39 (Length: 220)
Name: NF8841_low_39
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_39 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38840313 - 38840532
Alignment:
| Q |
1 |
ctcacgcaaatctcccacctatcacctactatagcatgaatcctaataacaacaaccaattcaagttatataacaacaacgggaaaacgacacatgcact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38840313 |
ctcacgcaaatctcccacctatcacctactatagcatgaatcctaataacaacaaccaattcaagttatataacaacaacgggaaaacgacacatgcacc |
38840412 |
T |
|
| Q |
101 |
ggcacatagagaaaaacgaaacttggcaggggcgcaggtttggacttctcagcacatttcaggaagaggtcaacataatcgcggaacgacataaaacaga |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38840413 |
ggcacatagagaaaaacgaaccttggcaggggtgcaggtttggacttctcagcacatttcaggaagaggtcaacataatcgcggaaagacataaaacaga |
38840512 |
T |
|
| Q |
201 |
tcaaggtgccattgagttca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38840513 |
tcaaggtgccattgagttca |
38840532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 9875589 - 9875632
Alignment:
| Q |
137 |
ggtttggacttctcagcacatttcaggaagaggtcaacataatc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
9875589 |
ggtttggacttctcagcacatttcaggaagagctcagcataatc |
9875632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9875436 - 9875486
Alignment:
| Q |
1 |
ctcacgcaaatctcccacctatcacctactatagcatgaatcctaataaca |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||| |||||| |||| |
|
|
| T |
9875436 |
ctcacgcaaatctcccacctatcacctactttggtatgagtcctaaaaaca |
9875486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 33371592 - 33371659
Alignment:
| Q |
1 |
ctcacgcaaatctcccacctatcacctactatagcatgaatcctaataacaacaaccaattcaagtta |
68 |
Q |
| |
|
|||| |||||||||| |||||||||||| | | |||||| ||||||||||| ||||||| ||| |||| |
|
|
| T |
33371592 |
ctcaggcaaatctccaacctatcacctaatttggcatgagtcctaataacagcaaccaaatcatgtta |
33371659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University