View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8841_low_4 (Length: 438)
Name: NF8841_low_4
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_4 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 183648 - 184080
Alignment:
| Q |
1 |
tgtttgcgttactcaagccgacatgctctcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaacgctcccctaccgattcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183648 |
tgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaacgctcccctaccgattcatt |
183747 |
T |
|
| Q |
101 |
tttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgcactctttcaagggtggctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183748 |
tttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgcactctttcaagggtggctgc |
183847 |
T |
|
| Q |
201 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
183848 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcg |
183947 |
T |
|
| Q |
301 |
acgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggcaccgctctcgcggccc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
183948 |
acgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggtaccgctctcgcggccc |
184047 |
T |
|
| Q |
401 |
gcgccgaaacagtgctttacccctagatgtcca |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
184048 |
gcgccgaaacagtgctttacccctagatgtcca |
184080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 493868 - 493436
Alignment:
| Q |
1 |
tgtttgcgttactcaagccgacatgctctcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaacgctcccctaccgattcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
493868 |
tgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaacgctcccctaccgattcatt |
493769 |
T |
|
| Q |
101 |
tttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgcactctttcaagggtggctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
493768 |
tttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgcactctttcaagggtggctgc |
493669 |
T |
|
| Q |
201 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
493668 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcg |
493569 |
T |
|
| Q |
301 |
acgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggcaccgctctcgcggccc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
493568 |
acgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggtaccgctctcgcggccc |
493469 |
T |
|
| Q |
401 |
gcgccgaaacagtgctttacccctagatgtcca |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
493468 |
gcgccgaaacagtgctttacccctagatgtcca |
493436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 18191529 - 18191097
Alignment:
| Q |
1 |
tgtttgcgttactcaagccgacatgctctcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaacgctcccctaccgattcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191529 |
tgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaacgctcccctaccgattcatt |
18191430 |
T |
|
| Q |
101 |
tttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgcactctttcaagggtggctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191429 |
tttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgcactctttcaagggtggctgc |
18191330 |
T |
|
| Q |
201 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191329 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcg |
18191230 |
T |
|
| Q |
301 |
acgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggcaccgctctcgcggccc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18191229 |
acgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggtaccgctctcgcggccc |
18191130 |
T |
|
| Q |
401 |
gcgccgaaacagtgctttacccctagatgtcca |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18191129 |
gcgccgaaacagtgctttacccctagatgtcca |
18191097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 34658867 - 34658576
Alignment:
| Q |
1 |
tgtttgcgttactcaagccgacatgctctcttccgcttcgtccaaccctgctcgcgcgggtacttcgttctaaggcggaacgctcccctaccgattcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34658867 |
tgtttgcgttactcaagccgacattctcgcttccgcttcgtccaaacctgctcgcgcgggtacttcgttctaaggcggaactctcccctaccgattcatt |
34658768 |
T |
|
| Q |
101 |
tttagatcccacagcttcggcagatcgcttagccccgttcatcttcggcgcaagagcgctcgatcagtgagctattacgcactctttcaagggtggctgc |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34658767 |
tttagatcccacagctttggcagatcgcttagccccgttcatcttcggcgcgagagcgctcgatcagtgagctattatgcactctttcaagggtggctgc |
34658668 |
T |
|
| Q |
201 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgagcgatcatttaggggccttagctggtgatctgggctgttt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658667 |
ttctaggcaaacctcctggctgtctctgcactcctacctcctttatcactgaacgatcatttaggggccttagctggtgatctgggctgttt |
34658576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 294 - 433
Target Start/End: Complemental strand, 34656843 - 34656704
Alignment:
| Q |
294 |
cctctcgacgatgaagcttatcccccatcgtctcactggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggcaccgctctc |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
34656843 |
cctctcgacgatgaagcttatcccacatcgtctcactggccgacttgacctgccagggatatctagtattcagagtttgcctcgatttggtacggctctc |
34656744 |
T |
|
| Q |
394 |
gcggcccgcgccgaaacagtgctttacccctagatgtcca |
433 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34656743 |
gcggcccgcgctgaaacagtgctttacccctagatgtcca |
34656704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 330 - 433
Target Start/End: Complemental strand, 16006459 - 16006356
Alignment:
| Q |
330 |
tggccgacttgacccgccagggatatctagtattcagagtttgcctcgatttggcaccgctctcgcggcccgcgccgaaacagtgctttacccctagatg |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
16006459 |
tggccgacttgacccgccagggatatctaatattcagagtttgcctcgatttggaaccgctcccgcggcccgtgccgaaacaatgctttacccctaaatg |
16006360 |
T |
|
| Q |
430 |
tcca |
433 |
Q |
| |
|
|||| |
|
|
| T |
16006359 |
tcca |
16006356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 21497 - 21628
Alignment:
| Q |
209 |
aaacctcctggctgtctctgcactcctacctcctt----tatcactgagcgatcatttaggggccttagctggtgatctgggctgtttccctctcgacga |
304 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||| ||||||| |||||||||||| | |||| ||||||||||| | ||||||||||||||| |
|
|
| T |
21497 |
aaacctcttggatgtctctgcactcctacctacttactttatcactaagcgatcatttaag----ttagttggtgatctggacaatttccctctcgacga |
21592 |
T |
|
| Q |
305 |
tgaagcttatcccccatcgtctcactggccgacttg |
340 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21593 |
tgaatcttatcccccatcgtctcactggccgacttg |
21628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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