View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_5 (Length: 430)
Name: NF8841_low_5
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 20550641 - 20551062
Alignment:
| Q |
1 |
agggtgtgttggatctatgccggtgtcaaccaacccaataacaactccttctccggctgtttcaaatccaccattttgagaccatgctccttgtggaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20550641 |
agggtgtgttggatctatgccggtgtcaaccaacccaataacaactccttctccggctgtttcaaatccaccattttgagaccatgctccttgtggcaga |
20550740 |
T |
|
| Q |
101 |
cccaaaaattgtggagtatgtgtagttgcacttctaacagaaaaatccaaaaccacattggcaacttcattgctccatgatagcctctctgccttcataa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550741 |
cccaaaaattgtggagtatgtgtagttgcagttctaacagaaaaatccaaaaccacattggcaacttcattgctccatgatagcctctctgccttcataa |
20550840 |
T |
|
| Q |
201 |
ttcagtaaattcgaaagtcaagaatacatttgttaaagcaaatgaaacaaaaataaaataaggaagtagtagtgttgaactatgtagcaccaacacttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550841 |
ttcagtaaattcgaaagtcaagaatacatttgttaaagcaaatgaaacaaaaataaaataaggaagtagtagtgttgaactatgtagcaccaacacttct |
20550940 |
T |
|
| Q |
301 |
cattaaagacatgtatggtgtctgataccaacgtgacattgacaagtgtggttatattcaatttttccgttttattaaattttgtccggtgttaacctgt |
400 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20550941 |
cattaaagacatgtatggtgtctgataccgacgtgacattgacaagtgtggttatattcaatttttccgttttattaaattttgaccggtgttaacctgt |
20551040 |
T |
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| Q |
401 |
tagtgtcatgtttgatgtccat |
422 |
Q |
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| T |
20551041 |
tagtgtcatgtttgatgtccat |
20551062 |
T |
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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 37075508 - 37075702
Alignment:
| Q |
1 |
agggtgtgttggatctatgccggtgtcaaccaacccaataacaactccttctccggctgtttcaaatccaccattttgagaccatgctccttgtggaaga |
100 |
Q |
| |
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||||||||| |||| ||||| |||||||| || ||||| | ||||||||| || |||||||| ||||| |||| |||| ||||| ||||| ||| |
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| T |
37075508 |
agggtgtgtatgatcaatgccagtgtcaacaaatgcaatagtgattccttctccagcagtttcaaacccacctgattgaaaccaagctccctgtggcaga |
37075607 |
T |
|
| Q |
101 |
cccaaaaattgtggagtatgtgtagttgcacttctaacagaaaaatccaaaaccacattggcaacttcattgctccatgatagcctctctgcctt |
195 |
Q |
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|| || || |||||||| ||||| |||||| ||| ||||||||||||||||||||||||| ||||| | |||| ||||||| |||||||||| |
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| T |
37075608 |
cctaagaactgtggagtgtgtgttgttgcagatcttacagaaaaatccaaaaccacattggacacttctcttctccttgatagcttctctgcctt |
37075702 |
T |
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