View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_6 (Length: 419)
Name: NF8841_low_6
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 18270153 - 18270554
Alignment:
| Q |
1 |
tttagacggcataggagagtgtagtttcaaatacaatagattgtgctttgtttgattttaaaacaaacagggacctacttttaatctgttttgaactaaa |
100 |
Q |
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| T |
18270153 |
tttagacggcataggagagtgtagtttcaaatacaatagattgtgctttgtttgattttaaaacaaacagggacctacttttaatctgttttgaactaaa |
18270252 |
T |
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| Q |
101 |
ggactaaattaaatttgaagtgaagttataagaattaaatggtttttgtttttgataagcggattaagtgagcgatgtaagatgttgaaaagctcagctg |
200 |
Q |
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| T |
18270253 |
ggactaaattaaatttgaagtgaagttataagaattaaatggtttttgtttttgataagcggat----tgagcgatgtaagatgttgacaagctcagctg |
18270348 |
T |
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| Q |
201 |
gtgaagacctctttgcaagtgggtgcaaggccatgataaaatctttctttcaaccccgtgaagtaaaaaatgaaccttctccctctctgtgtgatgtggg |
300 |
Q |
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| T |
18270349 |
gtgaagacctctttgcaagtgggtgcaagggcatgataaaatctttctttcaaccccgtgaagtaaaaaatgaaccttct-cctctctgtgtgatgtggg |
18270447 |
T |
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| Q |
301 |
gggtgcatttgttttcctaggtgaatgtgttgtatcggcacaagccaattgtttggtacttggataaaatctatagggtttcctgtatcaaaaacagtga |
400 |
Q |
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| T |
18270448 |
gggtgcatttgttttcctaggtgaatgtgttgtatcggcacaagccaattgtttgatacttggataaaatctatagggtttcctgtatcaaaaacagtga |
18270547 |
T |
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| Q |
401 |
tgtccat |
407 |
Q |
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| T |
18270548 |
tgtccat |
18270554 |
T |
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