View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_7 (Length: 411)
Name: NF8841_low_7
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_7 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 126 - 395
Target Start/End: Complemental strand, 16698072 - 16697803
Alignment:
| Q |
126 |
atacgaaccaaattttgcaatgcttgtacctaagtaaagaggcaaatgcctacagtcatgattgaaactccctagcactagcaaactagatatatgcaga |
225 |
Q |
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| T |
16698072 |
atacgaaccaaattttgcaatgcttgtacctaagtaaagaggcaaatgcctacagtcatgattgaaactccctagcactagcaaactagatatatgcaga |
16697973 |
T |
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| Q |
226 |
acacattgagtgccttcgcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatttttcattcgatactgcttctgcact |
325 |
Q |
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| T |
16697972 |
acacattgagtgccttggcttgcaacatgtgtcattgaaatagaagaaggaattgtccttggtttgctggaaatttttcattcgatactgcttctgcact |
16697873 |
T |
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| Q |
326 |
taagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagttttatatggatgtc |
395 |
Q |
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| T |
16697872 |
taagtattaattctagggaattcgcagatacattgatgtcattatgctcgttcagttttatatggatgtc |
16697803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 384
Target Start/End: Complemental strand, 38227527 - 38227357
Alignment:
| Q |
211 |
ctagatatatgcagaacacattgagtgccttcgcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatttttcattcga |
310 |
Q |
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| T |
38227527 |
ctagatatatgcagaacacatttactgccctggcttgcaacaggcatcat-gaaatggaagaagaattattcctgggtttgctggaaatttt-cattcga |
38227430 |
T |
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| Q |
311 |
tactgcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagtttt |
384 |
Q |
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| T |
38227429 |
tactgcttctacattgtagtatta-ttctagggaattcgcagagactttgatgtcattctgctggttcagtttt |
38227357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 38227649 - 38227564
Alignment:
| Q |
111 |
atgtctctgaaaggaatacgaaccaaattttgcaatgcttgtacctaagtaaagaggcaaatgcctacagtcatgattgaaactcc |
196 |
Q |
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| T |
38227649 |
atgtctctgagaggaatatcaaccagattttgcaatgcttctatctacttaaagaggcatatgcctacagtcatgatgaaaactcc |
38227564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 215 - 395
Target Start/End: Complemental strand, 103356 - 103176
Alignment:
| Q |
215 |
atatatgcagaacacattgagtgccttcgcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatttttcattcgatact |
314 |
Q |
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| T |
103356 |
atatacgcataacacatttaatgccttgtatttcaacaggcgtcattgaaatggaagaataaattatacctggcttgtttgaaaattttcatttgatact |
103257 |
T |
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| Q |
315 |
gcttctgcacttaagtattaattctagggaattcacagatactttgatgtcattatgctcgttcagttttatatggatgtc |
395 |
Q |
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| T |
103256 |
gattctgcactatagtattaattctagggaatttgcagagactttgatgtcattctgctggtttagttttatgtggatgtc |
103176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 103400 - 103363
Alignment:
| Q |
134 |
caaattttgcaatgcttgtacctaagtaaagaggcaaa |
171 |
Q |
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| T |
103400 |
caaattttgaaatgcttgtatctaagtaaagaggcaaa |
103363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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