View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8841_low_8 (Length: 411)
Name: NF8841_low_8
Description: NF8841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8841_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 38869220 - 38869630
Alignment:
| Q |
1 |
ttcccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagccattat |
100 |
Q |
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| T |
38869220 |
ttcccaccaagggaaacaaccttcctatcttcaacctttttgcgctctttccatgtcatatgcgagttgcctaagatatattgcaatgagtagccattat |
38869319 |
T |
|
| Q |
101 |
aaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgtactta |
200 |
Q |
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| T |
38869320 |
aaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgtactta |
38869419 |
T |
|
| Q |
201 |
gcattcaaattcgttcttatcatttaaaatcacaatgcagaaacgtcattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaatgagaag |
300 |
Q |
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| T |
38869420 |
gcattcaaattcgttcttatcatttaaaatcataatgcagaaacg-cattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaacgagaag |
38869518 |
T |
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| Q |
301 |
atagacaacattcaatggaaaataattttag-------aaagnnnnnnnnnngagagagaaaatactgaagttttggacgtcttccataatcttcctgat |
393 |
Q |
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| T |
38869519 |
atagacaacattcaatggaaaataattttagaaaaaaaaaaaaaaaaaaaaagagagagaaaatactgaagttttggacgtcttccataatcttcctgat |
38869618 |
T |
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| Q |
394 |
gtccatctcatt |
405 |
Q |
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| T |
38869619 |
gtccatttcatt |
38869630 |
T |
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