View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8842_low_2 (Length: 234)

Name: NF8842_low_2
Description: NF8842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8842_low_2
NF8842_low_2
[»] chr1 (4 HSPs)
chr1 (102-177)||(930754-930829)
chr1 (13-74)||(22105420-22105481)
chr1 (30-77)||(49410533-49410580)
chr1 (30-74)||(45319635-45319679)
[»] chr7 (2 HSPs)
chr7 (27-74)||(47329673-47329720)
chr7 (13-51)||(29263400-29263438)
[»] chr2 (1 HSPs)
chr2 (27-74)||(37080734-37080781)
[»] chr3 (4 HSPs)
chr3 (29-74)||(20108076-20108121)
chr3 (27-74)||(5234734-5234781)
chr3 (48-93)||(22426746-22426791)
chr3 (30-74)||(12945485-12945529)
[»] chr8 (1 HSPs)
chr8 (13-51)||(30936712-30936750)
[»] chr5 (2 HSPs)
chr5 (30-74)||(40321505-40321549)
chr5 (30-74)||(41406020-41406064)
[»] chr4 (1 HSPs)
chr4 (30-74)||(24226898-24226942)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 930754 - 930829
Alignment:
Q  102 caaaattataatccaatcacctatcgtccacgactcaccataaccctttcaaaaagcatccaactattcaaaactc 177  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  930754 caaaaatataatccaatcacctatcgtccacgactcaccataaacttctcaaaaagcatccaactattcaaaactc 930829  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 22105481 - 22105420
Alignment:
Q  13 gacatcatttaaaaacatggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    ||||||||| ||||||||||||||||||||||||||||| | | |||||| | |||||||||    
T  22105481 gacatcattcaaaaacatggcgcattattattggatgtaggataacttcaccgaaaaagtca 22105420  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 49410533 - 49410580
Alignment:
Q  30 tggcgcattattattggatgtaaggttacttcatcaaaaaagtcattt 77  Q
    |||||||||||||||||||||| ||| |||||| | ||||||||||||    
T  49410533 tggcgcattattattggatgtagggtaacttcaccgaaaaagtcattt 49410580  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 45319679 - 45319635
Alignment:
Q  30 tggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    |||||||||||||||| ||||||| | |||||| |||||||||||    
T  45319679 tggcgcattattattgaatgtaagataacttcaccaaaaaagtca 45319635  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 47329673 - 47329720
Alignment:
Q  27 acatggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  47329673 acatggcgcattattattggatgtaggataacttcatcaaaaaagtca 47329720  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 29263400 - 29263438
Alignment:
Q  13 gacatcatttaaaaacatggcgcattattattggatgta 51  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  29263400 gacatcatttaaaaacgtggcacattattattggatgta 29263438  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 37080734 - 37080781
Alignment:
Q  27 acatggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  37080734 acatggcgcattattattggatgtaggataacttcatcaaaaaagtca 37080781  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 20108076 - 20108121
Alignment:
Q  29 atggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||    
T  20108076 atggcgcattattattggatgtaagataacttcaccaaaaaagtca 20108121  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 5234734 - 5234781
Alignment:
Q  27 acatggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    ||||||||||||||||||| ||||| | | ||||||||||||||||||    
T  5234734 acatggcgcattattattgaatgtaggataacttcatcaaaaaagtca 5234781  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 22426791 - 22426746
Alignment:
Q  48 tgtaaggttacttcatcaaaaaagtcattttcgcaacttcaccgta 93  Q
    ||||||||||||||||| || |||||||||| ||||||||| ||||    
T  22426791 tgtaaggttacttcatcgaagaagtcattttggcaacttcatcgta 22426746  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 12945485 - 12945529
Alignment:
Q  30 tggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    |||||||||||||||||||||| | | |||||||| |||||||||    
T  12945485 tggcgcattattattggatgtaggataacttcatcgaaaaagtca 12945529  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 30936750 - 30936712
Alignment:
Q  13 gacatcatttaaaaacatggcgcattattattggatgta 51  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  30936750 gacatcatttaaaaacgtggcacattattattggatgta 30936712  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 40321505 - 40321549
Alignment:
Q  30 tggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    |||||||||||||||||||||| | | |||||||| |||||||||    
T  40321505 tggcgcattattattggatgtaggataacttcatcgaaaaagtca 40321549  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 41406064 - 41406020
Alignment:
Q  30 tggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    |||||||||||||||||||||| | | |||||||| |||||||||    
T  41406064 tggcgcattattattggatgtaggataacttcatcgaaaaagtca 41406020  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 24226942 - 24226898
Alignment:
Q  30 tggcgcattattattggatgtaaggttacttcatcaaaaaagtca 74  Q
    |||||||||||||||||||||| | | |||||||| |||||||||    
T  24226942 tggcgcattattattggatgtaggataacttcatcgaaaaagtca 24226898  T

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