View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8842_low_3 (Length: 209)
Name: NF8842_low_3
Description: NF8842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8842_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 20768936 - 20768756
Alignment:
| Q |
14 |
tattatttatattacctaattaacaatgatgcaaaattttatttcatattttgaatatctattgtcttggtgttggcatgtctctagggtctaccaattc |
113 |
Q |
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| T |
20768936 |
tattatttatattacctaattaacaatgatgcaaaattttatttgaaattttgaatatctattatcttggtgttggcatgtctctagggtctaccaattc |
20768837 |
T |
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| Q |
114 |
tatatagtttaattctttgcatgtgtatttctaatatggtttcaatacataaaggttgcata---attgctaatggaatct |
191 |
Q |
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| T |
20768836 |
tatatagtttaattctttgcatgtgtatttctaatatggtttcaatacataaaggttgcataattattgctaatggaatct |
20768756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 20756715 - 20756538
Alignment:
| Q |
14 |
tattatttatattacctaattaacaatgatgcaaaattttatttcatattttgaatatctattgtcttggtgttggcatgtctctagggtctaccaattc |
113 |
Q |
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| T |
20756715 |
tattatttatcttacctaattaaaaatgatgcaaacttttatttgaaattttgaagatatattgtcttggtgttggcatgtctctagggtccaccaattc |
20756616 |
T |
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| Q |
114 |
tatatagtttaattctttgcatgtgtatttctaatatggtttcaatacataaaggttgcataattgctaatggaatct |
191 |
Q |
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| T |
20756615 |
tatatagtttaattctttgcatgtgtatttctaatatggtttcaatacataaaggttgcataattgctaatggaatct |
20756538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 20747167 - 20747109
Alignment:
| Q |
80 |
ttggtgttggcatgtctctagggtctaccaattctatatagtttaattctttgcatgtgt |
139 |
Q |
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| T |
20747167 |
ttggtgttggcatgcctctaggg-ctaccaattctatatagtttaattatttgcatgtgt |
20747109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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