View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8843_high_3 (Length: 267)
Name: NF8843_high_3
Description: NF8843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8843_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 7666934 - 7667174
Alignment:
| Q |
14 |
acatcaattttgccgaataatcccattccttcaaggcgcagaccggttacaagaccgttgtaacaaacaacgccttcccattgatcgtcttcggtacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7666934 |
acatcaattttgccgaataatcccattccttcaaggcgcagaccggttacaagaccgttgtaacaaacaacgccttcccattgatcgtcttcggtacaag |
7667033 |
T |
|
| Q |
114 |
gtaaagtgttggcaaaccaactatttagagcattagcatttgagaatgagttttttagatttaataaagcttctgtttctgacaaggaatatatcataga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667034 |
gtaaagtgttggcaaaccaactatttagagcattagcatttgagaatgagttttttagatttaataaagcttctgtttctgacaaggaatatatcataga |
7667133 |
T |
|
| Q |
214 |
aaaatttatgatgatattgaagatcaagatgaagaatgatg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667134 |
aaaatttatgatgatattgaagatcaagatgaagaatgatg |
7667174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University