View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8843_high_5 (Length: 238)
Name: NF8843_high_5
Description: NF8843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8843_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 54704113 - 54704335
Alignment:
| Q |
1 |
gcatgtcaatggaatcttggttgtgaaggttgcgcc-gatcttaaagtcacaaaagttgaattcccagatgcaactaatgtttttaaaacgaggtaggtt |
99 |
Q |
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| T |
54704113 |
gcatgtcaatggaatcttggttgtgaatgtcgcgcccgatcttaaagtcacaaaagttgaattcccatatgcaacaaatgtttttaaaacgaggaatgtt |
54704212 |
T |
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| Q |
100 |
acctttggcatcggttaaagtgagaccgatctgaatgattttaagagcatcaacatttgatttcaaataactgtattgttcgtaaggttggagatgacgg |
199 |
Q |
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| T |
54704213 |
acctttggcatcggttaaagtgagaccgatctgaatgattttaagagcatcaacatttgatttcaaataactgtattgttcgtaaggttggagatgacgg |
54704312 |
T |
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| Q |
200 |
tggtcgactttgagtggaaaaat |
222 |
Q |
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| T |
54704313 |
tggtcgactttgagtggaaaaat |
54704335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 42678594 - 42678443
Alignment:
| Q |
41 |
ttaaagtcacaaaagttgaattcccagatgcaactaatgtttttaaaacgaggtaggttacctttggcatcggttaaagtgagaccgatctgaatgattt |
140 |
Q |
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|||||||||| || ||||||||||||||| ||| | |||| | | || ||| |||||||| | ||||| | ||| || |||||||||||||| || | |
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| T |
42678594 |
ttaaagtcacggaaattgaattcccagatgtaacgattgttctgatcactagggaggttaccaattgcatccgataaggtaagaccgatctgaataatgt |
42678495 |
T |
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| Q |
141 |
taagagcatcaacatttgatttcaaataactgtattgttcgtaaggttggag |
192 |
Q |
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| T |
42678494 |
ttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggag |
42678443 |
T |
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