View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8843_low_1 (Length: 475)
Name: NF8843_low_1
Description: NF8843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8843_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 44089967 - 44089601
Alignment:
| Q |
18 |
ctagtttcaggtggtttttatacattagcttcccttgaaatgtgttacaaagcagttcatagtacgtagttcataccacagccaatctacacgactacac |
117 |
Q |
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| T |
44089967 |
ctagtttcagttggttt--atacattagcttcccttgaaatgtgttacaaatcagttcatagtacgtagttcataccacagccaatctacacaactacac |
44089870 |
T |
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| Q |
118 |
tagctttgagtcatgttcatatgataagataccttatgtacaaatcatacaactattttttatataagaaatcactttcaaaatatacagaaatatcaaa |
217 |
Q |
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| T |
44089869 |
tagctttgaatcatgttcatatgataatataccttatgtacaaatcatacaactattttttatataagaaatcactttcaaaatatacagaaatatcaaa |
44089770 |
T |
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| Q |
218 |
tgaagaaattcattaatatctatctagtatagtgactgtgtgaatctgagttgcaatagttaacattgttgctccttcaaattcagtaaattatagtata |
317 |
Q |
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| T |
44089769 |
tgaagaaattcattaatatctatctattatagtgactgtgtgaatctgagttgcaatagttaacattgttgctccttcaaattcagtaaattattgtata |
44089670 |
T |
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| Q |
318 |
ctttatagtttattcagaaactcgtatatcctgcacgggaaaatacaagatgagggacttgtgttaagt |
386 |
Q |
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| T |
44089669 |
ctttatagtttattcagaaactcgtatatcctgcacgggaaagtacaagatgagggacttgtgttaagt |
44089601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 44050447 - 44050280
Alignment:
| Q |
142 |
taagataccttatgtacaaatcatacaactattttttatataagaaatcactttcaaaatataca-gaaatatcaaatgaagaaattcattaatatctat |
240 |
Q |
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| T |
44050447 |
taagataccatatgtacaaatcatacaatcattttctctataagaattaactttcaaaatacataagaaatatcaaatgaagaaatttattactaa-tat |
44050349 |
T |
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| Q |
241 |
ctagtatagtgactgtgtgaatctgag---ttgcaatagttaacattgttgctccttcaaattcagtaaat |
308 |
Q |
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| T |
44050348 |
ctagtat--tgactgtgtgaatttgagaagttgcaatagctagcattgttgctccttcaaattcagtaaat |
44050280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 44089492 - 44089454
Alignment:
| Q |
387 |
tgaatttgtcatgatttctccattttcgttctctgcatc |
425 |
Q |
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| T |
44089492 |
tgaatttgtcatgatttcttcattttcgttctctgcatc |
44089454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 44088455 - 44088415
Alignment:
| Q |
199 |
aatatacagaaatatcaaatgaagaaattcattaatatcta |
239 |
Q |
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| T |
44088455 |
aatatatagaaatatcaaatgaagaaatttattaatatcta |
44088415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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