View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8843_low_3 (Length: 374)

Name: NF8843_low_3
Description: NF8843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8843_low_3
NF8843_low_3
[»] chr2 (3 HSPs)
chr2 (254-302)||(17616578-17616626)
chr2 (71-140)||(7501378-7501446)
chr2 (253-297)||(17698334-17698378)
[»] chr8 (1 HSPs)
chr8 (74-140)||(24279642-24279707)
[»] chr4 (1 HSPs)
chr4 (271-344)||(23056985-23057059)
[»] chr1 (3 HSPs)
chr1 (74-140)||(37701557-37701622)
chr1 (74-140)||(37683895-37683960)
chr1 (281-339)||(38336811-38336869)
[»] chr6 (1 HSPs)
chr6 (71-139)||(21528877-21528944)
[»] chr3 (1 HSPs)
chr3 (71-139)||(51229546-51229613)
[»] chr7 (1 HSPs)
chr7 (85-139)||(43779796-43779849)
[»] chr5 (1 HSPs)
chr5 (75-140)||(23023852-23023916)


Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 17616626 - 17616578
Alignment:
Q  254 acggcagggtcgtggtcggatggacgaatttgagtagatccggtggtgg 302  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  17616626 acggcagggtcgtggttggatggacggatttgagtagatccggcggtgg 17616578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 7501446 - 7501378
Alignment:
Q  71 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 140  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| ||||||||||||||||||||    
T  7501446 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatgc 7501378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 17698378 - 17698334
Alignment:
Q  253 gacggcagggtcgtggtcggatggacgaatttgagtagatccggt 297  Q
    ||||||||||||||||| |||  |||| |||||||||||||||||    
T  17698378 gacggcagggtcgtggtaggagagacggatttgagtagatccggt 17698334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 24279642 - 24279707
Alignment:
Q  74 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 140  Q
    |||||||||||||||||||||||| |||   ||||||  || |||||||||||||||||||||||||    
T  24279642 aaccaatgactcagtgacccagtaacctcg-tcaagtcaatgaccgatccgagttttaaaactatgc 24279707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 23056985 - 23057059
Alignment:
Q  271 ggatggacgaatttgagtagatccggtggt-ggggtgaacggcggtggtgagatggaggatgggtgatggtggtg 344  Q
    |||||||  ||||||||||||||||||||| |||||||||| ||||||||||  | |||||| |||||| |||||    
T  23056985 ggatggaaaaatttgagtagatccggtggtgggggtgaacgacggtggtgaggagaaggatgagtgatgatggtg 23057059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 37701557 - 37701622
Alignment:
Q  74 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 140  Q
    |||||||||||||||||| |||||||| |||   |||||||||||  ||||||||||||||||||||    
T  37701557 aaccaatgactcagtgacgcagtaccc-ttactgagttgatcaccagtccgagttttaaaactatgc 37701622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 37683960 - 37683895
Alignment:
Q  74 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 140  Q
    |||||||||||||||||| |||||||| |||   ||||||||||   ||||||||||||||||||||    
T  37683960 aaccaatgactcagtgacgcagtaccc-ttactgagttgatcactagtccgagttttaaaactatgc 37683895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 38336869 - 38336811
Alignment:
Q  281 atttgagtagatccggtggtggggtgaacggcggtggtgagatggaggatgggtgatgg 339  Q
    |||||||||| | || ||||||||||||||||||||||||   | ||||||||||||||    
T  38336869 atttgagtagtttcgatggtggggtgaacggcggtggtgaagagaaggatgggtgatgg 38336811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 21528877 - 21528944
Alignment:
Q  71 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 139  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| |||||||||||||||||||    
T  21528877 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatg 21528944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 51229546 - 51229613
Alignment:
Q  71 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 139  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| |||||||||||||||||||    
T  51229546 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatg 51229613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 43779796 - 43779849
Alignment:
Q  85 cagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 139  Q
    |||||||||| ||||||| | | ||| ||||||||||||||||||||||||||||    
T  43779796 cagtgacccaataccctt-accgagtcgatcaccgatccgagttttaaaactatg 43779849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 23023916 - 23023852
Alignment:
Q  75 accaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 140  Q
    ||||||||| ||||||| |||||||||| | | ||| |||||||| | ||||||||||||||||||    
T  23023916 accaatgacccagtgactcagtaccctt-accgagtcgatcaccggttcgagttttaaaactatgc 23023852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University