View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8843_low_7 (Length: 243)
Name: NF8843_low_7
Description: NF8843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8843_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 44088361 - 44088208
Alignment:
| Q |
1 |
catttaagcagaataaagtataaactatgcacagttaaatcaagagaaacataaagtatgtagtaaacaatatcaataagaaaacaatgcactttattag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44088361 |
catttaagcagaataaagtataaactatgcacagttaaatcaagagaaacataaagtatgtagtaagcaatatcaataagaaaacaatgcactttattag |
44088262 |
T |
|
| Q |
101 |
aaagcaatagcattcgtaaacaaattaacccacaatctataatgtttaacaaaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44088261 |
aaagcaatagcattcgtaaacaaattaacccacaatctataatgttaaacaaaa |
44088208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 44068355 - 44068211
Alignment:
| Q |
16 |
aagtataaactatgcacagttaaatcaagagaaaca---taaagtatgtagtaaacaatatcaataagaaaacaatgcactttattagaaagcaatagca |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44068355 |
aagtataaactatgcacagttaaataaagagaaacaatataaagtatgtcgtaaacaatatcaataagaaaacaagccactttattagaaagcaatagca |
44068256 |
T |
|
| Q |
113 |
ttcgtaaacaaattaac---ccacaatctataatgtttaacaaaa |
154 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
44068255 |
ttcgtaaacaaattaacccgccacaatctataatgttaaacaaaa |
44068211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 44080379 - 44080231
Alignment:
| Q |
12 |
aataaagtataaactatgcacagttaaatcaagagaaaca---taaagtatgtagtaaacaatatcaataagaaaacaatgcactttattagaaagcaat |
108 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44080379 |
aataaagtattaactatgcatagttaaataaagagaaacaatataaagtatgttctaaacaatatcaataagaaaacaagccactttattagaaagcaat |
44080280 |
T |
|
| Q |
109 |
agcattcgtaaacaaattaac---ccacaatctataatgtttaacaaaa |
154 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
44080279 |
agcattcgtaaacaaattaacccgccacaatctataatgttaaacaaaa |
44080231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 44087920 - 44087844
Alignment:
| Q |
145 |
tttaacaaaatcatcaccgcaattctccatcttcgccacattgtctagaacaagttgacgaagttgagtaaacgact |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087920 |
tttaacaaaatcatcaccgcaattctccatcttcgccacattgtctagaacaagttgacgaagttgagtaaacgact |
44087844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 44079942 - 44079863
Alignment:
| Q |
145 |
tttaacaaaatcatcaccgcaattctccatcttcgccacattgtctagaacaagttgacgaagttgagtaaacgactctt |
224 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44079942 |
tttaacagactcatcaccgcaattctccatcttcgccacattgtctagaacaagttgacgaagttgaataaacgactctt |
44079863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 44088586 - 44088485
Alignment:
| Q |
12 |
aataaagtataaactatgcacagttaaatcaagagaaaca------taaagtatgtagtaaacaatatcaataagaaaacaatgcactttattagaaagc |
105 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
44088586 |
aataaagtataaactatgcatagttaaattaagagaaacaatataataaagtatgtcgtaaaccatatcaataagaaaacaa-gcactttattaaaaagc |
44088488 |
T |
|
| Q |
106 |
aat |
108 |
Q |
| |
|
||| |
|
|
| T |
44088487 |
aat |
44088485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 44053494 - 44053458
Alignment:
| Q |
12 |
aataaagtataaactatgcacagttaaatcaagagaa |
48 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
44053494 |
aataaagtataaactatggacagttaaattaagagaa |
44053458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University