View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8843_low_9 (Length: 230)
Name: NF8843_low_9
Description: NF8843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8843_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44088348 - 44088561
Alignment:
| Q |
1 |
attctgcttaaatgaaaattttctcaatgctagctatcgcaacttctcaaattcacacagtcgctactagatattaataaatttcttcatttgatatttc |
100 |
Q |
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| T |
44088348 |
attctgcttaaatgaaaattttctcaatgctagctatcgcaacttctcaaattcacacagtcgctactagatattaataaatttcttcatttgatatttc |
44088447 |
T |
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| Q |
101 |
tatatattatgtttttcggttttgtttaacgcgatacattgctttttaataaagtgcttgttttcttattgatatggtttacgacatactttattatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44088448 |
tatatattatgtttttcggttttgtttaacgcgatacattgctttttaataaagtgcttgttttcttattgatatggtttacgacatactttattatatt |
44088547 |
T |
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| Q |
201 |
gtttctcttaattt |
214 |
Q |
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|||||||||||||| |
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| T |
44088548 |
gtttctcttaattt |
44088561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 44050303 - 44050382
Alignment:
| Q |
25 |
caatgctagctatcgcaacttctcaaattcacacagtcgctactagatat---taataaatttcttcatttgatatttct |
101 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
44050303 |
caatgctagctattgcaacttctcaaattcacacagtcaatactagatattagtaataaatttcttcatttgatatttct |
44050382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 44068260 - 44068334
Alignment:
| Q |
138 |
attgctttttaataaagtg-cttgttttcttattgatatggtttacgacatactttattatattgtttctcttaattt |
214 |
Q |
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| T |
44068260 |
attgctttctaataaagtggcttgttttcttattgatattgtttacgacatact---ttatattgtttctctttattt |
44068334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 44080280 - 44080354
Alignment:
| Q |
138 |
attgctttttaataaagtg-cttgttttcttattgatatggtttacgacatactttattatattgtttctcttaattt |
214 |
Q |
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|||||||| |||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||| |
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| T |
44080280 |
attgctttctaataaagtggcttgttttcttattgatattgtttagaacatact---ttatattgtttctctttattt |
44080354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 44088254 - 44088311
Alignment:
| Q |
138 |
attgctttttaataaagtgc-ttgttttcttattgatatggtttacgacatactttat |
194 |
Q |
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|||||||| ||||||||||| |||||||||||||||||| | |||| ||||||||||| |
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| T |
44088254 |
attgctttctaataaagtgcattgttttcttattgatattgcttactacatactttat |
44088311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 44089748 - 44089788
Alignment:
| Q |
68 |
tagatattaataaatttcttcatttgatatttctatatatt |
108 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| |
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| T |
44089748 |
tagatattaatgaatttcttcatttgatatttctgtatatt |
44089788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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