View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8844_low_1 (Length: 443)
Name: NF8844_low_1
Description: NF8844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8844_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 42517026 - 42516585
Alignment:
| Q |
1 |
atgaaaatgaccaacttgaagtgagctaagaatgacaacatatatagtggaagcaaacacatgagtacctagctagtctcacatttctcaaaaacaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42517026 |
atgaaaatgaccaacttgaagtgagctaagaatgacaacata----gtggaagcaaacacatgagtacctagctagtctcacatttctcaaaaacaatgt |
42516931 |
T |
|
| Q |
101 |
aatagtcgtcaatgacaagggatttacttttttcatgaaagaatagattggtagct----------------cgaaacatctaacaatgcaaaagaaatg |
184 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
42516930 |
aatagtc---aatgacaagggatttacttttttcatgaaagaatagat-ggtagctataatgagagcacttacgaaacatctaacaatgcaaaagaaatg |
42516835 |
T |
|
| Q |
185 |
aatcaaaaagaaaatagagttgaacaagaaaatcagaacggttctaatcagtgtagctcaatcatgtcatgtacggtaacacataataacaacttattac |
284 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42516834 |
aatcaagaagaaaatagagttgaacaagaaaatcagaacggttctaatcagtgtagctcaatcatgtcatgtacggtaacacataataacaacttattac |
42516735 |
T |
|
| Q |
285 |
aaatcatggcaagcatattctatgaatcaactaataaaaatgattgatatacaaattattgtgattaattatttgcaataatagagaggctgatttatgg |
384 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42516734 |
aaatcatggcaagcatattctatgaatcaactaaaataaatgattgatatacaaattattgtgattaattatttgcaataatagagaggctgatttatgg |
42516635 |
T |
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| Q |
385 |
aatagtgattgctcctttacaggttaagggtgaggaatgtcagaataatc |
434 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42516634 |
aatagtgattgctcctttacaggtcaagggtgaggaatgtcagaataatc |
42516585 |
T |
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