View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8844_low_2 (Length: 442)

Name: NF8844_low_2
Description: NF8844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8844_low_2
NF8844_low_2
[»] chr6 (1 HSPs)
chr6 (100-429)||(16550182-16550513)
[»] chr2 (4 HSPs)
chr2 (179-429)||(36248702-36248958)
chr2 (270-363)||(36248131-36248224)
chr2 (399-429)||(19626628-19626658)
chr2 (399-429)||(19823529-19823559)
[»] chr1 (1 HSPs)
chr1 (244-363)||(23084274-23084393)
[»] chr3 (1 HSPs)
chr3 (33-182)||(34613667-34613815)
[»] chr7 (3 HSPs)
chr7 (290-363)||(28942797-28942870)
chr7 (179-303)||(7707758-7707883)
chr7 (401-429)||(4826653-4826681)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 100 - 429
Target Start/End: Complemental strand, 16550513 - 16550182
Alignment:
Q  100 ccatttgtctcaagtcaaagtttgttgttacagggatgtgattgtttgggctatatcatatttttgatgctcaccttacaaatatggaataaatattttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16550513 ccatttgtctcaagtcaaagtttgttgttacagggatgtgattttttgggctatatcatatttttgatgctcacctcacaaatatggaataaatattttt 16550414  T
Q  200 acaaatcttcaatgttgctttgatgnnnnnnnnn--aagtacatcttttgtattttactattatatgaattctcaattgttttttgaacaaactgaattc 297  Q
    |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16550413 acaaatcttcaatgttgctttgatgttttttttttaaagtacatcttttgtattttactattatatgaattctcaattgttttttgaacaaactgaattc 16550314  T
Q  298 tcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgctcnnnnnnnttaatgtaattactaacctgattctc 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||    
T  16550313 tcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgctcaaaaaaattaaggtaattactaacctgattctc 16550214  T
Q  398 gacaagtagtttgatgttgagataattgatgt 429  Q
    ||||||||||||||||||||| ||||||||||    
T  16550213 gacaagtagtttgatgttgaggtaattgatgt 16550182  T

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Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 179 - 429
Target Start/End: Original strand, 36248702 - 36248958
Alignment:
Q  179 aaatatggaataaatatttttacaaatcttcaatgttgctttgatgnnnnnnnnn-------aagtacatcttttgtattttactattatatgaattctc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||| |||||||||||||||||||||||||    
T  36248702 aaatatggaataaatatttttacaaatcttcaatgttgctttgatttttttttttttttttaaagtacatcttt-gtattttactattatatgaattctc 36248800  T
Q  272 aattgttttttgaacaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgctcnnnnnnn 371  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||           
T  36248801 aattgttttttgaacaaactgaattctaaatctaaactttggaaatggtttaatttgttaacatagctcacaagcacatctctgccattgctcaaaaaaa 36248900  T
Q  372 ttaatgtaattactaacctgattctcgacaagtagtttgatgttgagataattgatgt 429  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248901 ttaaggtaattactaacctgattctcgacaagtagtttgatgttgagataattgatgt 36248958  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 36248131 - 36248224
Alignment:
Q  270 tcaattgttttttgaacaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgct 363  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  36248131 tcaattgttttttgaagaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcgcaagcacatctcttccattgct 36248224  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 429
Target Start/End: Original strand, 19626628 - 19626658
Alignment:
Q  399 acaagtagtttgatgttgagataattgatgt 429  Q
    |||||||||||||||||||||||||||||||    
T  19626628 acaagtagtttgatgttgagataattgatgt 19626658  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 429
Target Start/End: Original strand, 19823529 - 19823559
Alignment:
Q  399 acaagtagtttgatgttgagataattgatgt 429  Q
    |||||||||||||||||||||||||||||||    
T  19823529 acaagtagtttgatgttgagataattgatgt 19823559  T

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Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 23084393 - 23084274
Alignment:
Q  244 tttgtattttactattatatgaattctcaattgttttttgaacaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcaca 343  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  23084393 tttgtattttactattatctgaattctcaattgttttttgaacaaactgaattctcaatctaaactttgaaaatgatttaatttgttaacagagctcaca 23084294  T
Q  344 agcacatctctgccattgct 363  Q
    | ||||||||| ||||||||    
T  23084293 aacacatctcttccattgct 23084274  T

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Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 34613667 - 34613815
Alignment:
Q  33 tttagatttacatatttgttctcttgtattcatattgtttgtcatcttattctttttggttggatccccatttgtctcaagtcaaagtttgttgttacag 132  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||| |||||  |||||||||||||||    
T  34613667 tttagacttacatatttgttctcttgtatttatattgtttatcatcttattctttttgactggatccccatttgtctaaagtc--agtttgttgttacag 34613764  T
Q  133 ggatgtgattgtttgggctatatcatat-ttttgatgctcaccttacaaat 182  Q
    ||||||||||||||||||||||||| || ||||||||||||| | ||||||    
T  34613765 ggatgtgattgtttgggctatatcaaatattttgatgctcacttcacaaat 34613815  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 28942797 - 28942870
Alignment:
Q  290 ctgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgct 363  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28942797 ctgaattctcaatctaaattttggaaatgatttaatttgttaacagagctcacaagcacatctcttccattgct 28942870  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 7707883 - 7707758
Alignment:
Q  179 aaatatggaataaatatttttacaaatcttcaatgttgctttgatgnnnnnnnnn--aagtacatcttttgtattttactattatatgaattctcaattg 276  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||           || ||||||||| ||||||||||||||| | ||||||||||||    
T  7707883 aaatatggaataaatatttttacaaatcttcattgttgttttgatgtttttttttttaaatacatcttt-gtattttactattatctaaattctcaattg 7707785  T
Q  277 ttttttgaacaaactgaattctcaatc 303  Q
    ||||||||||||||| |||||||||||    
T  7707784 ttttttgaacaaactaaattctcaatc 7707758  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 429
Target Start/End: Original strand, 4826653 - 4826681
Alignment:
Q  401 aagtagtttgatgttgagataattgatgt 429  Q
    |||||||||||||||||||||||||||||    
T  4826653 aagtagtttgatgttgagataattgatgt 4826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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