View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8844_low_3 (Length: 324)

Name: NF8844_low_3
Description: NF8844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8844_low_3
NF8844_low_3
[»] chr4 (4 HSPs)
chr4 (1-305)||(8324304-8324612)
chr4 (234-264)||(43902318-43902348)
chr4 (235-271)||(5841455-5841491)
chr4 (239-271)||(56250328-56250360)
[»] chr6 (4 HSPs)
chr6 (49-207)||(10728059-10728226)
chr6 (234-271)||(1063623-1063660)
chr6 (234-271)||(4582001-4582038)
chr6 (229-266)||(16464446-16464483)
[»] chr5 (2 HSPs)
chr5 (234-271)||(4441078-4441115)
chr5 (234-271)||(11796186-11796223)
[»] chr1 (9 HSPs)
chr1 (234-271)||(7351693-7351730)
chr1 (234-271)||(32970591-32970628)
chr1 (234-273)||(31154183-31154222)
chr1 (237-279)||(9379281-9379323)
chr1 (234-272)||(27687297-27687335)
chr1 (234-271)||(6160483-6160520)
chr1 (234-279)||(8896356-8896401)
chr1 (235-268)||(28092572-28092605)
chr1 (234-271)||(44761555-44761592)
[»] chr8 (5 HSPs)
chr8 (234-271)||(36006909-36006946)
chr8 (234-270)||(5356657-5356693)
chr8 (234-271)||(4428373-4428410)
chr8 (235-271)||(13831618-13831654)
chr8 (235-271)||(15810005-15810041)
[»] chr7 (4 HSPs)
chr7 (234-271)||(2850909-2850946)
chr7 (235-268)||(30107183-30107216)
chr7 (234-271)||(39452408-39452445)
chr7 (235-271)||(39308650-39308686)
[»] chr3 (5 HSPs)
chr3 (234-271)||(30711130-30711167)
chr3 (234-271)||(24569121-24569158)
chr3 (234-271)||(51837980-51838017)
chr3 (234-271)||(54477480-54477517)
chr3 (231-279)||(38512074-38512122)
[»] chr2 (6 HSPs)
chr2 (240-271)||(19444203-19444234)
chr2 (234-273)||(43730485-43730524)
chr2 (234-271)||(15359106-15359143)
chr2 (234-271)||(39691547-39691584)
chr2 (234-271)||(43730670-43730707)
chr2 (231-271)||(36173358-36173398)
[»] scaffold0302 (1 HSPs)
scaffold0302 (234-271)||(16155-16192)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 8324612 - 8324304
Alignment:
1 gatagacatctattcatgcattgcaatgtgtggttgagggtgctatattggttccaaggggagatgataatgcaccaaatttgttcaacctttggaagt- 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||     
8324612 gatagacatctattcatgcattgcaatgtgtggttgagggtgctatattggttacaaggggagatgataatgcgccaaatttgttcaacctttgtaagta 8324513  T
100 ---gttggaatagtatgtcgaggagtaaaaaggaaacaaaggggatgagactcatttgacattcaacgatttgggtcatatggaaagctagaaacaattg 196  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
8324512 agtgttggaatagtatgtcgaggagtaaaaaggaaacaaaggggatgagactcatttgacattcaacgatttgggtcatatggaaagttagaaacaattg 8324413  T
197 tattttcaacatctattcaagccttcggtatcacttttgttgattttaatgataaaattaatattatttactaaattatattttccgagctacacttatt 296  Q
     |||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
8324412 cattttcaacatctattcaagtctttggtatcgcttttgttgattttaatgataaaattaatattatttactaaattatattttccgagttacacttatt 8324313  T
297 ttgaatagg 305  Q
    |||||||||    
8324312 ttgaatagg 8324304  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 43902348 - 43902318
Alignment:
234 tgttgattttaatgataaaattaatattatt 264  Q
    |||||||||||||||||||||||||||||||    
43902348 tgttgattttaatgataaaattaatattatt 43902318  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 5841455 - 5841491
Alignment:
235 gttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||| |||||||||||| ||||||||||    
5841455 gttgattttaatggtaaaattaatatcatttactaaa 5841491  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 56250328 - 56250360
Alignment:
239 attttaatgataaaattaatattatttactaaa 271  Q
    ||||| |||||||||||||||||||||||||||    
56250328 attttgatgataaaattaatattatttactaaa 56250360  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 10728226 - 10728059
Alignment:
49 tggttccaaggggagatgataatgca-ccaaatttgttcaacctttggaagtgttggaa--------tagtatgtcgaggagtaaaaaggaaacaaaggg 139  Q
    ||||| |||||||||||||||||||  ||||||||||| |||| |||| | ||||||||        ||||||||||||||  |||||||||||||||||    
10728226 tggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacatggaatagtatgtcgaggaacaaaaaggaaacaaaggg 10728127  T
140 gatgagactcatttgacattcaacgatttgggtcatatggaaagctagaaacaattgtattttcaaca 207  Q
    |||||| |||||||  |||||||||||||||||| |||||||||||||||||||||  ||||||||||    
10728126 gatgagtctcatttagcattcaacgatttgggtcttatggaaagctagaaacaatttcattttcaaca 10728059  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 1063623 - 1063660
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||| ||||||||||||| ||||||||||||||    
1063623 tgttgatttcaatgataaaattagtattatttactaaa 1063660  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 4582001 - 4582038
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    |||||||||||||| |||||||||||| ||||||||||    
4582001 tgttgattttaatggtaaaattaatatcatttactaaa 4582038  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 16464483 - 16464446
Alignment:
229 acttttgttgattttaatgataaaattaatattattta 266  Q
    ||||| ||||||||||||| ||||||||||||||||||    
16464483 actttggttgattttaatggtaaaattaatattattta 16464446  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 4441115 - 4441078
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||||||||||||||||||    
4441115 tgttgattttaatgataaaattaatattatttactaaa 4441078  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 11796186 - 11796223
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||||||||||||||||||    
11796186 tgttgattttaatgataaaattaatattatttactaaa 11796223  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 7351730 - 7351693
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||||||||||||||||||    
7351730 tgttgattttaatgataaaattaatattatttactaaa 7351693  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 32970591 - 32970628
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||| ||||||||||||||||||||||||||||    
32970591 tgttgatttcaatgataaaattaatattatttactaaa 32970628  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 31154222 - 31154183
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaatt 273  Q
    ||||||||||||||||||||||| |||||| |||||||||    
31154222 tgttgattttaatgataaaattagtattatctactaaatt 31154183  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 9379323 - 9379281
Alignment:
237 tgattttaatgataaaattaatattatttactaaattatattt 279  Q
    |||||||||||||||||||||||| ||||| |||| |||||||    
9379323 tgattttaatgataaaattaatatcatttattaaaatatattt 9379281  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 27687335 - 27687297
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaat 272  Q
    ||||||||| |||| ||||||||||||||||||||||||    
27687335 tgttgatttcaatggtaaaattaatattatttactaaat 27687297  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 6160483 - 6160520
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||| ||||||||||||| ||||||||||||||    
6160483 tgttgatttcaatgataaaattagtattatttactaaa 6160520  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 8896356 - 8896401
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaattatattt 279  Q
    ||||||||| |||| |||||||||||| |||||||||| |||||||    
8896356 tgttgatttcaatggtaaaattaatatcatttactaaaatatattt 8896401  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 28092605 - 28092572
Alignment:
235 gttgattttaatgataaaattaatattatttact 268  Q
    ||||||||||||| ||||||||||||||||||||    
28092605 gttgattttaatggtaaaattaatattatttact 28092572  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 44761555 - 44761592
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    |||| |||||||||||||||||||||| ||||||||||    
44761555 tgttaattttaatgataaaattaatatcatttactaaa 44761592  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 36006909 - 36006946
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||||||||||| ||||||    
36006909 tgttgattttaatgataaaattaatattattgactaaa 36006946  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 5356693 - 5356657
Alignment:
234 tgttgattttaatgataaaattaatattatttactaa 270  Q
    ||||||||||||||||||||||||||| |||||||||    
5356693 tgttgattttaatgataaaattaatatcatttactaa 5356657  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 4428373 - 4428410
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||| ||| ||||||||||    
4428373 tgttgattttaatgataaaattattatcatttactaaa 4428410  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 13831618 - 13831654
Alignment:
235 gttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||| |||||||||||||||||| ||||    
13831618 gttgattttaatggtaaaattaatattatttattaaa 13831654  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 15810005 - 15810041
Alignment:
235 gttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||| || ||||||||||||||||||||    
15810005 gttgattttaatggtagaattaatattatttactaaa 15810041  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 2850909 - 2850946
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||| ||||||||||||||||||||||||||||    
2850909 tgttgatttcaatgataaaattaatattatttactaaa 2850946  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 30107216 - 30107183
Alignment:
235 gttgattttaatgataaaattaatattatttact 268  Q
    ||||||||||||| ||||||||||||||||||||    
30107216 gttgattttaatggtaaaattaatattatttact 30107183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 39452445 - 39452408
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    |||||||||||||| |||||||||||| ||||||||||    
39452445 tgttgattttaatggtaaaattaatatcatttactaaa 39452408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 39308686 - 39308650
Alignment:
235 gttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||  |||||||||||||||||||||||    
39308686 gttgattttaatagtaaaattaatattatttactaaa 39308650  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 30711167 - 30711130
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||||||| ||||||||||    
30711167 tgttgattttaatgataaaattaatatcatttactaaa 30711130  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 24569121 - 24569158
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||| |||| |||||||||||||||||||||||    
24569121 tgttgatttcaatggtaaaattaatattatttactaaa 24569158  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 51837980 - 51838017
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||| ||||||||||||||||| ||||||||||    
51837980 tgttgatttcaatgataaaattaatatcatttactaaa 51838017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 54477480 - 54477517
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    |||||||||||||| |||||||||||| ||||||||||    
54477480 tgttgattttaatggtaaaattaatatcatttactaaa 54477517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 38512122 - 38512074
Alignment:
231 ttttgttgattttaatgataaaattaatattatttactaaattatattt 279  Q
    |||| |||||||||||||||||||| |||| ||||| |||| |||||||    
38512122 ttttattgattttaatgataaaattgatatcatttattaaaatatattt 38512074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 19444234 - 19444203
Alignment:
240 ttttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||||||||||||    
19444234 ttttaatgataaaattaatattatttactaaa 19444203  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 43730524 - 43730485
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaatt 273  Q
    |||||||||||||| |||||||||||| ||||||||||||    
43730524 tgttgattttaatggtaaaattaatatcatttactaaatt 43730485  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 15359106 - 15359143
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    |||||||||| |||||||||||||||| ||||||||||    
15359106 tgttgattttgatgataaaattaatatcatttactaaa 15359143  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 39691584 - 39691547
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||| ||||||||||||||||| ||||||||||    
39691584 tgttgatttcaatgataaaattaatatcatttactaaa 39691547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 43730707 - 43730670
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    |||||||||||||| |||||||||||| ||||||||||    
43730707 tgttgattttaatggtaaaattaatatcatttactaaa 43730670  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 36173358 - 36173398
Alignment:
231 ttttgttgattttaatgataaaattaatattatttactaaa 271  Q
    |||||||||||||| ||||||||||||||| ||||| ||||    
36173358 ttttgttgattttagtgataaaattaatatcatttattaaa 36173398  T

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Target: scaffold0302 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 16192 - 16155
Alignment:
234 tgttgattttaatgataaaattaatattatttactaaa 271  Q
    ||||||||||||||||||||||||||  ||||||||||    
16192 tgttgattttaatgataaaattaatagcatttactaaa 16155  T

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