View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8844_low_4 (Length: 309)
Name: NF8844_low_4
Description: NF8844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8844_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 4903614 - 4903329
Alignment:
| Q |
14 |
caaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaacca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4903614 |
caaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcgtgaagaagtttccaagtaaaaacca |
4903515 |
T |
|
| Q |
114 |
ccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttaga |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4903514 |
ccactttcgacggtgccgggctcttccaaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtttccaatttaga |
4903415 |
T |
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| Q |
212 |
atacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
297 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903414 |
atacattgattttaccgaaaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
4903329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 1556905 - 1556828
Alignment:
| Q |
197 |
tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctc |
274 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||| |||| |||| |
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| T |
1556905 |
tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctc |
1556828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
| Q |
50 |
tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac |
117 |
Q |
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| T |
1557054 |
tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac |
1556987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 22153943 - 22154207
Alignment:
| Q |
14 |
caaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaacca |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22153943 |
caaacacactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta---------------------aaaacca |
22154021 |
T |
|
| Q |
114 |
ccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttaga |
211 |
Q |
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||||| |||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22154022 |
tcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttaga |
22154121 |
T |
|
| Q |
212 |
atacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
297 |
Q |
| |
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||| ||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22154122 |
ataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattca |
22154207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 22209858 - 22210122
Alignment:
| Q |
14 |
caaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaacca |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22209858 |
caaacacactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattcta---------------------aaaacca |
22209936 |
T |
|
| Q |
114 |
ccactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttaga |
211 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22209937 |
tcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttaga |
22210036 |
T |
|
| Q |
212 |
atacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
297 |
Q |
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||| ||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22210037 |
ataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattca |
22210122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 256
Target Start/End: Original strand, 34821645 - 34821847
Alignment:
| Q |
56 |
atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaa |
153 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| || | |||| ||||||| ||| |||| || | |
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| T |
34821645 |
atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaaca |
34821744 |
T |
|
| Q |
154 |
ccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacct |
253 |
Q |
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| T |
34821745 |
ccctcctctccccatcttgaagattgtcaaccggcaccatcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacct |
34821844 |
T |
|
| Q |
254 |
cca |
256 |
Q |
| |
|
||| |
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|
| T |
34821845 |
cca |
34821847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 53561944 - 53561813
Alignment:
| Q |
126 |
gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta |
225 |
Q |
| |
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||||| ||||||||||||||| || ||||||||| || ||||||| | || ||||| | |||||||||||||||||| |||||||| ||||| | |
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| T |
53561944 |
gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa |
53561845 |
T |
|
| Q |
226 |
ccgaaaaagcaccttcctcttccaacctccaa |
257 |
Q |
| |
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||||||||| ||| ||||||||||| |||||| |
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|
| T |
53561844 |
ccgaaaaagtaccgtcctcttccaaactccaa |
53561813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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