View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8846_high_12 (Length: 229)

Name: NF8846_high_12
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8846_high_12
NF8846_high_12
[»] chr5 (30 HSPs)
chr5 (1-175)||(26792580-26792755)
chr5 (1-168)||(10023908-10024076)
chr5 (1-168)||(8429851-8430019)
chr5 (1-168)||(30347756-30347924)
chr5 (1-168)||(24631076-24631245)
chr5 (1-161)||(27879869-27880031)
chr5 (1-111)||(43448315-43448425)
chr5 (1-85)||(4050667-4050751)
chr5 (1-85)||(30313243-30313327)
chr5 (1-85)||(25544019-25544103)
chr5 (35-168)||(37371689-37371824)
chr5 (1-71)||(3688820-3688890)
chr5 (1-71)||(3877895-3877965)
chr5 (1-77)||(37260185-37260262)
chr5 (1-82)||(14194148-14194227)
chr5 (1-57)||(39882072-39882128)
chr5 (1-82)||(17872176-17872255)
chr5 (1-82)||(26831498-26831580)
chr5 (1-85)||(6088079-6088161)
chr5 (1-85)||(15033855-15033937)
chr5 (21-85)||(43525174-43525238)
chr5 (21-85)||(18115668-18115732)
chr5 (25-82)||(2262289-2262346)
chr5 (108-168)||(3877974-3878035)
chr5 (108-168)||(43448217-43448278)
chr5 (108-168)||(14194305-14194367)
chr5 (108-168)||(3688750-3688811)
chr5 (108-168)||(4050543-4050604)
chr5 (127-168)||(30313155-30313196)
chr5 (1-30)||(37371842-37371871)
[»] chr3 (26 HSPs)
chr3 (1-175)||(10108748-10108923)
chr3 (1-175)||(10229987-10230162)
chr3 (1-175)||(10233582-10233757)
chr3 (1-168)||(27273181-27273349)
chr3 (1-168)||(31588-31755)
chr3 (1-111)||(23092377-23092487)
chr3 (1-89)||(15329842-15329930)
chr3 (1-111)||(41764642-41764752)
chr3 (1-85)||(10037503-10037587)
chr3 (1-111)||(11367480-11367590)
chr3 (1-85)||(11361117-11361201)
chr3 (1-85)||(9999279-9999364)
chr3 (1-85)||(10234291-10234376)
chr3 (1-85)||(37803030-37803112)
chr3 (1-82)||(10109472-10109554)
chr3 (1-85)||(10230699-10230783)
chr3 (1-85)||(47691897-47691979)
chr3 (1-82)||(50409033-50409112)
chr3 (23-79)||(10970196-10970252)
chr3 (21-85)||(10040934-10041000)
chr3 (21-82)||(41221070-41221131)
chr3 (108-168)||(10037379-10037440)
chr3 (108-168)||(10040809-10040869)
chr3 (108-145)||(10970330-10970367)
chr3 (1-69)||(52917633-52917699)
chr3 (108-161)||(23092284-23092339)
[»] chr2 (19 HSPs)
chr2 (1-161)||(36047970-36048131)
chr2 (1-168)||(26955198-26955366)
chr2 (1-168)||(39441945-39442112)
chr2 (1-168)||(28667452-28667621)
chr2 (1-168)||(37826286-37826455)
chr2 (1-111)||(24270226-24270336)
chr2 (1-158)||(41921449-41921607)
chr2 (1-111)||(21394199-21394309)
chr2 (1-82)||(24244735-24244814)
chr2 (3-85)||(35608759-35608839)
chr2 (1-82)||(40488965-40489047)
chr2 (1-82)||(2881749-2881828)
chr2 (1-82)||(17687626-17687704)
chr2 (1-82)||(27508245-27508324)
chr2 (21-82)||(3641932-3641993)
chr2 (175-215)||(5141262-5141302)
chr2 (108-168)||(21394099-21394161)
chr2 (108-168)||(3641795-3641857)
chr2 (108-161)||(24270373-24270427)
[»] scaffold0550 (1 HSPs)
scaffold0550 (1-168)||(4804-4972)
[»] chr7 (8 HSPs)
chr7 (1-168)||(42230931-42231099)
chr7 (1-161)||(7035488-7035649)
chr7 (9-168)||(12787266-12787426)
chr7 (3-118)||(9002399-9002516)
chr7 (1-85)||(45122628-45122712)
chr7 (1-85)||(21071328-21071413)
chr7 (1-82)||(5829808-5829890)
chr7 (1-82)||(22843403-22843482)
[»] chr6 (12 HSPs)
chr6 (1-168)||(31512767-31512935)
chr6 (1-168)||(29642629-29642797)
chr6 (1-85)||(12516248-12516332)
chr6 (3-111)||(24195736-24195844)
chr6 (1-85)||(15330399-15330483)
chr6 (1-82)||(10186417-10186496)
chr6 (1-82)||(4221282-4221361)
chr6 (1-82)||(30880927-30881006)
chr6 (1-81)||(12518480-12518558)
chr6 (108-161)||(12516130-12516184)
chr6 (22-84)||(14906360-14906422)
chr6 (108-168)||(15330276-15330337)
[»] scaffold0582 (1 HSPs)
scaffold0582 (1-168)||(10196-10364)
[»] chr1 (17 HSPs)
chr1 (1-168)||(52499507-52499676)
chr1 (1-168)||(18147465-18147633)
chr1 (1-160)||(36518723-36518883)
chr1 (1-168)||(6312267-6312435)
chr1 (1-116)||(37391420-37391534)
chr1 (1-111)||(16748940-16749050)
chr1 (1-85)||(25075130-25075214)
chr1 (1-85)||(16040885-16040969)
chr1 (1-82)||(48776602-48776683)
chr1 (1-85)||(2454028-2454110)
chr1 (1-85)||(7101831-7101913)
chr1 (21-85)||(28960934-28960998)
chr1 (1-82)||(36206082-36206161)
chr1 (1-85)||(48240065-48240147)
chr1 (21-85)||(16043225-16043289)
chr1 (48-82)||(12450841-12450875)
chr1 (108-160)||(16040771-16040823)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-168)||(50215-50383)
[»] chr8 (13 HSPs)
chr8 (1-168)||(25219844-25220012)
chr8 (1-161)||(7780533-7780689)
chr8 (1-161)||(7820623-7820779)
chr8 (3-168)||(30305922-30306085)
chr8 (1-111)||(37915312-37915422)
chr8 (1-111)||(21114950-21115061)
chr8 (9-89)||(14764486-14764566)
chr8 (1-89)||(31979799-31979887)
chr8 (1-65)||(33862660-33862724)
chr8 (1-82)||(13424496-13424575)
chr8 (21-82)||(14713145-14713206)
chr8 (108-168)||(14713008-14713069)
chr8 (111-168)||(31979949-31980007)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-168)||(29841-30012)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-176)||(13232-13408)
[»] chr4 (14 HSPs)
chr4 (1-168)||(55560243-55560410)
chr4 (18-168)||(6244698-6244849)
chr4 (1-168)||(49788104-49788273)
chr4 (1-111)||(31920304-31920414)
chr4 (1-116)||(35854737-35854851)
chr4 (1-89)||(49709033-49709121)
chr4 (1-111)||(786752-786860)
chr4 (1-64)||(38517436-38517499)
chr4 (1-85)||(618590-618672)
chr4 (21-82)||(37532700-37532761)
chr4 (1-57)||(1859565-1859621)
chr4 (97-168)||(38517365-38517437)
chr4 (97-168)||(1859474-1859545)
chr4 (108-168)||(37532836-37532897)
[»] scaffold0636 (1 HSPs)
scaffold0636 (1-132)||(37-168)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-89)||(133142-133230)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-89)||(310970-311058)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-85)||(10006-10090)
[»] scaffold0073 (4 HSPs)
scaffold0073 (1-85)||(23454-23538)
scaffold0073 (1-89)||(18315-18403)
scaffold0073 (108-168)||(23330-23391)
scaffold0073 (111-168)||(18195-18253)
[»] scaffold0003 (4 HSPs)
scaffold0003 (1-85)||(164387-164471)
scaffold0003 (1-85)||(172502-172586)
scaffold0003 (108-161)||(164270-164324)
scaffold0003 (108-161)||(172385-172439)
[»] scaffold0888 (1 HSPs)
scaffold0888 (1-85)||(1001-1083)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-85)||(17871-17956)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-85)||(13355-13437)
[»] scaffold0134 (2 HSPs)
scaffold0134 (1-82)||(6506-6588)
scaffold0134 (108-168)||(6663-6724)
[»] scaffold1424 (1 HSPs)
scaffold1424 (1-82)||(551-633)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-82)||(185432-185514)
[»] scaffold0012 (2 HSPs)
scaffold0012 (21-82)||(98113-98174)
scaffold0012 (108-168)||(98249-98311)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-82)||(3592-3671)
[»] scaffold0022 (1 HSPs)
scaffold0022 (21-82)||(125091-125152)
[»] scaffold1370 (1 HSPs)
scaffold1370 (21-85)||(1462-1528)
[»] scaffold0107 (1 HSPs)
scaffold0107 (21-85)||(44867-44933)
[»] scaffold0533 (1 HSPs)
scaffold0533 (97-168)||(11536-11609)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 26792755 - 26792580
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  26792755 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 26792656  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 175  Q
    |||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||    
T  26792655 tcgaatttaaaatctatacatttgatcaaaaaagattattatttccccgtgctggcacgggtcactatatactagt 26792580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 10024076 - 10023908
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  10024076 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 10023977  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  10023976 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 10023908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 8429851 - 8430019
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||       ||||    
T  8429851 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatgaagatgatatttttttcata 8429950  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  8429951 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 8430019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 30347756 - 30347924
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  30347756 ataattagtacaagtataataatccaaatatttttatcattatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 30347855  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| ||||| |  |||||||||||||||||||||||||| ||||||    
T  30347856 tcgaatttaaaatctatacatttgatcaaaaatgttttttatttccccgtgctggcacgggtcactata 30347924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 24631076 - 24631245
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  24631076 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 24631175  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaag-aattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| |||| || |||||||   |||||||||||||||||||||||||| ||||||    
T  24631176 tcgaatttaaaatctatacatttaatcaaaaaagtttttttatttccccgtgctggcacgggtcactata 24631245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 27880031 - 27879869
Alignment:
Q  1 ataattagtacaagtataataatccaaa-tatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncat 99  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||       |||    
T  27880031 ataattagtacaagtataataatccaaaatatttttatcgttatatggaatttttagatatttcaaaatatatacaaaattaagatgatatttttttcat 27879932  T
Q  100 atcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 161  Q
    ||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||    
T  27879931 atcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggt 27879869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43448425 - 43448315
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||       ||||    
T  43448425 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttaaatttttcaaaatatatacaaaattaagattatattgttttcata 43448326  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  43448325 tcgaatttaaa 43448315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 4050751 - 4050667
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050751 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 4050667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 30313327 - 30313243
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30313327 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 30313243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25544019 - 25544103
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25544019 ataattagtacaagtataataatccaaatacttttatcgttatatgcgatgtttagatatttcaaaatatatacaaaattaagat 25544103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 37371824 - 37371689
Alignment:
Q  35 tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata-nnnnnnncatatcgaatttaaaatctatatatttgat-aaaaaa 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||| |||| || ||||||    
T  37371824 tatcattatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattttttttcatatcgaatttaaaatctatacattttatcaaaaaa 37371725  T
Q  133 gaattttatttccccgtgctggcacgggttactata 168  Q
    |  |||||||| ||||||||||||||||| ||||||    
T  37371724 gttttttattttcccgtgctggcacgggtcactata 37371689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3688890 - 3688820
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatata 71  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3688890 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaattata 3688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3877895 - 3877965
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatata 71  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3877895 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaattata 3877965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37260262 - 37260185
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatat-ttcaaaatatatacaaa 77  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||    
T  37260262 ataattagtacaagtataataatccaaatacttttatcattatatgcaatgtttagatatatacaaaatatatacaaa 37260185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14194148 - 14194227
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14194148 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 14194227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 39882128 - 39882072
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttaga 57  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39882128 ataattagtacaagtataataatccatatatttttatcgttatatgcaatgtttaga 39882072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 17872176 - 17872255
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  17872176 ataattagtataagtataa--atccaaatactttaatcgttatatgcaatgtttagatatttttaaatatatacaaaattaa 17872255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26831580 - 26831498
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| || |||||||| |||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  26831580 ataattagtataaatataataaatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaa 26831498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 6088161 - 6088079
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||  || |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  6088161 ataattagtataagtataa--attcaaatactttaatcgttatgtgcaatgtttagatatttcaaactatatacaaaattaagat 6088079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15033855 - 15033937
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    ||||||| || ||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  15033855 ataattaatataagtataa--atccaaatactttgatcgttatgtgcaatgtttagatatttcaaaatatattcaaaattaagat 15033937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 43525174 - 43525238
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  43525174 aatccaaatactttaatcattatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 43525238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 18115732 - 18115668
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||| ||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  18115732 aatccaaatactttaatcattaagtgcaatgtttagatatttcaaaatatatacaaaattaagat 18115668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 2262289 - 2262346
Alignment:
Q  25 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2262289 caaatactttaatcgttatctgcaatgtttagatatttcaaaatatatataaaattaa 2262346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 3877974 - 3878035
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  3877974 taaaatctatacatatgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 3878035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 43448278 - 43448217
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||| |||||| || ||||||||||||||||||||||||| ||||||    
T  43448278 taaaatctatacatatgatcaaaaaaaaaatttatttccccgtgctggcacgggtcactata 43448217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 14194305 - 14194367
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgc-tggcacgggttactata 168  Q
    ||||||||||| ||||||| |||||||  |||||||||||||||| |||||||||| ||||||    
T  14194305 taaaatctatacatttgattaaaaaagttttttatttccccgtgcttggcacgggtcactata 14194367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 3688811 - 3688750
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||| |||||||  |||||||||||| ||||||||||||| ||||||    
T  3688811 taaaatctatacatatgatcaaaaaagttttttatttccccatgctggcacgggtcactata 3688750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 4050604 - 4050543
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||| |||||||  ||||||| |||||||||||||||||| ||||||    
T  4050604 taaaatctatacatatgatgaaaaaagttttttattcccccgtgctggcacgggtcactata 4050543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 30313196 - 30313155
Alignment:
Q  127 aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||  |||||||||||||||||||||||||| ||||||    
T  30313196 aaaaaagttttttatttccccgtgctggcacgggtcactata 30313155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37371871 - 37371842
Alignment:
Q  1 ataattagtacaagtataataatccaaata 30  Q
    ||||||||||||||||||||||||||||||    
T  37371871 ataattagtacaagtataataatccaaata 37371842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10108923 - 10108748
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  10108923 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 10108824  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 175  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||| |||||||||||||| |||||||||||||    
T  10108823 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccctgtgctggcacgggtcactatatactagt 10108748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10230162 - 10229987
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  10230162 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 10230063  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 175  Q
    |||||||||||||||||  ||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||    
T  10230062 tcgaatttaaaatctatccatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatatactagt 10229987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10233757 - 10233582
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  10233757 ataattattacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagataatatttttttcata 10233658  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 175  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||    
T  10233657 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatatactagt 10233582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 27273349 - 27273181
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||       ||||    
T  27273349 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatataaaattaagatgatatttttttcata 27273250  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||||||||| |||||||| ||||||    
T  27273249 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctagcacgggtcactata 27273181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 31755 - 31588
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||       ||||    
T  31755 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatt-agatgatatttttttcata 31657  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||| ||| ||||||    
T  31656 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacaggtcactata 31588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 23092487 - 23092377
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||       ||||    
T  23092487 ataattagtacaagtataataatccaaatatttttatcgttatatgcagtgtttagatatttcaaaatatatacaaaaataagattatatatttttcata 23092388  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  23092387 tcgaatttaaa 23092377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15329842 - 15329930
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 89  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15329842 ataattagtacaagtataacaatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 15329930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41764642 - 41764752
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  41764642 ataattagtacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 41764741  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  41764742 tcgaatttaaa 41764752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10037587 - 10037503
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10037587 ataattagtacaagtatagtaatccaaatacttttatcgttatatgcaatgtttggatatttcaaaatatatacaaaattaagat 10037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11367590 - 11367480
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||       ||||    
T  11367590 ataattagtacaagtataataatccaaataatttaatcgatatatgcaaagtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 11367491  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  11367490 tcgaatttaaa 11367480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11361201 - 11361117
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  11361201 ataattagtacaaatataataatccaaatacttttatggttatatgcaatgtttagatatttcaaattatatacaaaattaagat 11361117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9999364 - 9999279
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| || |||||||| |||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  9999364 ataattagtataaatataataaatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 9999279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10234376 - 10234291
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| || |||||||| |||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  10234376 ataattagtataaatataataaatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 10234291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37803030 - 37803112
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37803030 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttagatatctcaaaatatatacaaaattaagat 37803112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10109554 - 10109472
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| || |||||||| |||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  10109554 ataattagtataaatataataaatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaa 10109472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10230783 - 10230699
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| || |||||||| |||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  10230783 ataattagtataaatataataaatccaaatactttaatcgctatgtgcaa-gtttagatatttcaaaatatatacaaaattaagat 10230699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 47691979 - 47691897
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    ||||||| || ||||||||  || |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  47691979 ataattaatataagtataa--attcaaatactttaatcgttatgtgcaatgtttagatatttcaaattatatacaaaattaagat 47691897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 50409112 - 50409033
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  || |||||| ||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  50409112 ataattagtataagtataa--attcaaatactttaatcgttatgtgcaatgtttatatatttcaaaatatatacaatattaa 50409033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 10970196 - 10970252
Alignment:
Q  23 tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaat 79  Q
    |||||||| ||| |||||| | |||||||||||||||||||||||||||||||||||    
T  10970196 tccaaatactttaatcgttgtgtgcaatgtttagatatttcaaaatatatacaaaat 10970252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 10041000 - 10040934
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttaga--tatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||| ||| |||| |||||||||||||  ||||||||||||||||||||||||||||    
T  10041000 aatccaaatactttaatccttatgtgcaatgtttagacatatttcaaaatatatacaaaattaagat 10040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 41221131 - 41221070
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||| ||  |||| |||||||||||| |||||||||||||||||||||||||    
T  41221131 aatccaaatactttaatatttatgtgcaatgtttaggtatttcaaaatatatacaaaattaa 41221070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 10037440 - 10037379
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  10037440 taaaatctatacatatgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 10037379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 10040869 - 10040809
Alignment:
Q  108 taaaatctatatatttgataaaaaagaattttatttccccgtgc-tggcacgggttactata 168  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||| |||||||||| ||||||    
T  10040869 taaaatctatacatttgataaaaaagttttttattt-cccgtgcttggcacgggtcactata 10040809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 10970330 - 10970367
Alignment:
Q  108 taaaatctatatatttgataaaaaagaattttatttcc 145  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  10970330 taaaatctatatatttgataaaaaagttttttatttcc 10970367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 52917699 - 52917633
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaata 69  Q
    |||||||||| ||||||||   |||||||| ||| |||||||| | |||||||||||||||| ||||||    
T  52917699 ataattagtataagtataac--tccaaatactttaatcgttatgtccaatgtttagatattttaaaata 52917633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 23092339 - 23092284
Alignment:
Q  108 taaaatctatatatttgataaaaaagaatttt--atttccccgtgctggcacgggt 161  Q
    ||||||||||| || |||||||||| | ||||  ||||||||||||||||||||||    
T  23092339 taaaatctatacatatgataaaaaaaagttttttatttccccgtgctggcacgggt 23092284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 36047970 - 36048131
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  36047970 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 36048069  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 161  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||    
T  36048070 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggt 36048131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 26955198 - 26955366
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  26955198 ataattagtacaagtataataatctaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 26955297  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  26955298 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 26955366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 39441945 - 39442112
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  39441945 ataattagtacaagtataatgatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 39442044  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||||| ||||  |||||| |||||||  |||||||| ||||||||||||||||| ||||||    
T  39442045 tcgaatttaaaatttatacttttgatcaaaaaagttttttattt-cccgtgctggcacgggtcactata 39442112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 28667452 - 28667621
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncat 99  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||    
T  28667452 ataatcagtacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcat 28667551  T
Q  100 atcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||||||||||| |||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  28667552 atcgaatttaaaatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 28667621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 37826286 - 37826455
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncat 99  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||    
T  37826286 ataatcagtacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcat 37826385  T
Q  100 atcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||||||||||| |||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  37826386 atcgaatttaaaatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 37826455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24270226 - 24270336
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  24270226 ataattagtacaggtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatatatttttcata 24270325  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  24270326 tcgaatttaaa 24270336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 41921449 - 41921607
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncat 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||    
T  41921449 ataattagtacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgata-ttttttcat 41921547  T
Q  100 atcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacg 158  Q
    ||||||||||||||||||| |||| || |||||||  |||||||||||| ||||||||||    
T  41921548 atcgaatttaaaatctatacatttaatcaaaaaagttttttatttccccatgctggcacg 41921607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 21394309 - 21394199
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||       ||||    
T  21394309 ataattagtacaagtataataatctaaatatttttatcgttatatgcagtgtttagatattttaaaatatatacaaaaataagattatatatttttcata 21394210  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  21394209 tcgaatttaaa 21394199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24244814 - 24244735
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24244814 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 24244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 35608839 - 35608759
Alignment:
Q  3 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||| ||||||||  ||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35608839 aattagtataagtataa--atccagatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 35608759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 40488965 - 40489047
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||||| || ||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  40488965 ataattagtataagtataataaatctaaatactttaatcgttatgtgcaatgtttagatatttaaaaatatatacaaaattaa 40489047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2881749 - 2881828
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  || |||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  2881749 ataattagtataagtataa--attcaaatactttaattgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 2881828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 17687626 - 17687704
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  |||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  17687626 ataattagtataagtataa--atccaa-tactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 17687704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27508324 - 27508245
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  || |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  27508324 ataattagtataagtataa--attcaaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaa 27508245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 3641993 - 3641932
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  3641993 aatctaaatactttaatcgttatgtgcaatgtttggatatttcaaaatatatacaaaattaa 3641932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 5141262 - 5141302
Alignment:
Q  175 tataggaaaagaaataacccaacttaaacatcgagccatct 215  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  5141262 tataggaaaagaaataacccaacttagacatcgagccatct 5141302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 21394161 - 21394099
Alignment:
Q  108 taaaatctatatatttgataaaaaagaatttt--atttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||||||||| | ||||  |||||||||||||||||||||||| ||||    
T  21394161 taaaatctatacatatgataaaaaaaagttttttatttccccgtgctggcacgggttattata 21394099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 3641857 - 3641795
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgc-tggcacgggttactata 168  Q
    ||||||||||| |||| || ||||||| ||||||||||||||||| |||||||||| ||||||    
T  3641857 taaaatctatacatttaatcaaaaaagtattttatttccccgtgcttggcacgggtcactata 3641795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 24270373 - 24270427
Alignment:
Q  108 taaaatctatatatttgataaaaaa-gaattttatttccccgtgctggcacgggt 161  Q
    ||||||||||| || |||||||||| |  ||||||||||||||||||||||||||    
T  24270373 taaaatctatacatatgataaaaaaagttttttatttccccgtgctggcacgggt 24270427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 4804 - 4972
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||       ||||    
T  4804 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgttttgatatttcaaaatatatacaaaattaagatgatatttttttcata 4903  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  4904 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 4972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 42231099 - 42230931
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  42231099 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 42231000  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  42230999 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 42230931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 7035649 - 7035488
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||       ||||    
T  7035649 ataattagtacaagtataataatccaaatatttttatcgttatatgaaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 7035550  T
Q  101 tcgaatttaaaatctatatatttga-taaaaaagaattttatttccccgtgctggcacgggt 161  Q
    |||||||||||||||||| |||||| ||||||||  ||||||||||||||| | ||||||||    
T  7035549 tcgaatttaaaatctatacatttgattaaaaaagttttttatttccccgtgttagcacgggt 7035488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 12787266 - 12787426
Alignment:
Q  9 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||| |||||    
T  12787266 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcaaattt 12787365  T
Q  109 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||| ||||||| |||||||  |||||||||||||| |  |||||||| ||||||    
T  12787366 aaaatctatacatttgatcaaaaaagttttttatttccccgtaccagcacgggtcactata 12787426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 9002399 - 9002516
Alignment:
Q  3 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat--tatannnnnnncata 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||       ||||    
T  9002399 aattagtacaagtataataattcaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatatttttttcata 9002498  T
Q  101 tcgaatttaaaatctata 118  Q
    ||||||||||||||||||    
T  9002499 tcgaatttaaaatctata 9002516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 45122628 - 45122712
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45122628 ataattagtacaagtataataattcaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 45122712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 21071328 - 21071413
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||||| |||||||| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||    
T  21071328 ataattagtataagtataataaatccaaatactttaatcgttgtgtacaatgtttagatatttcaaaatatatacaaaattaagat 21071413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5829808 - 5829890
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||| ||| || ||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||    
T  5829808 ataattagtataagtatagtaaatcaaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatttacaaaattaa 5829890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 22843482 - 22843403
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| || |||||  ||||||||| |||  ||||||| ||||||||||||||||||  ||||||||||||||||||    
T  22843482 ataattagtataaatataa--atccaaatactttagtcgttatgtgcaatgtttagatatttttaaatatatacaaaattaa 22843403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 31512767 - 31512935
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||       ||||    
T  31512767 ataattagtacaagtataataatccaaatatttttatcgttatatgcaacgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 31512866  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  31512867 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 31512935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 29642629 - 29642797
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||       ||||    
T  29642629 ataattagtacaagtataataatccaaatatttttatcgttgtatgcaacgtttagatatttcaaaatatatacaaaattaagatcatatttttttcata 29642728  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  29642729 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 29642797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 12516332 - 12516248
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12516332 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 12516248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 24195844 - 24195736
Alignment:
Q  3 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatc 102  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  24195844 aattaatacaagtataataatcaaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatattgttttcatatc 24195745  T
Q  103 gaatttaaa 111  Q
    |||||||||    
T  24195744 gaatttaaa 24195736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15330483 - 15330399
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15330483 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttaaatatttcaaaatatatacaaaattaagat 15330399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10186496 - 10186417
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10186496 ataattagtataagtataa--atccaaatattttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 10186417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4221282 - 4221361
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  || |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  4221282 ataattagtataagtataa--atacaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 4221361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30881006 - 30880927
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  30881006 ataattagtataagtataa--atccaaatactttaatcgttatatgcaatgtttagatatttttaaatatatacaaaattaa 30880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 12518558 - 12518480
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatta 81  Q
    ||||||| || ||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||    
T  12518558 ataattaatataagtataa--atccaaatactttgatcgttatgtgcaatgtttagatatttcaaaatttatacaaaatta 12518480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 12516184 - 12516130
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 161  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  12516184 taaaatctatatatatgatcaaaaaagttttttatttccccgtgctggcacgggt 12516130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 14906422 - 14906360
Alignment:
Q  22 atccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaaga 84  Q
    ||||||||| ||| ||| |||| |||||| ||||||||||||||||||| |||| ||||||||    
T  14906422 atccaaatactttaatcattatgtgcaatatttagatatttcaaaatatttacagaattaaga 14906360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 15330337 - 15330276
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  15330337 taaaatctatacatatgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 15330276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 10364 - 10196
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||        |||    
T  10364 ataattagtacaagtataataatccaaatatttttatcgttatatgcaacgtttagatatttcaaaatatatacaaaattaagatgatattttttttata 10265  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  10264 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 10196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 52499676 - 52499507
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  52499676 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 52499577  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaag-aattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| |||| || |||||||   |||||||||||||||||||||||||| ||||||    
T  52499576 tcgaatttaaaatctatacatttaatcaaaaaagtttttttatttccccgtgctggcacgggtcactata 52499507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 18147633 - 18147465
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||       ||||    
T  18147633 ataattagtacaagtataataatccaaatatttttatcgctatgtgcaatgcttagatatttcaaaatatatacaaaattaagatgatatttttttcata 18147534  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  18147533 tcgaatttaaaatctatatatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 18147465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 36518883 - 36518723
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||       ||||    
T  36518883 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaaaatgatatttttttcata 36518784  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacggg 160  Q
    |||||||||||||||||| ||||||| |||||| |||||||||| |||||||| |||||||    
T  36518783 tcgaatttaaaatctatacatttgatcaaaaaaaaattttattttcccgtgctagcacggg 36518723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 6312267 - 6312435
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||        ||||    
T  6312267 ataattagtacaaatataataatccaaatatttttatcgttatatgcaatgtttagatattttaaaatatatacaaaattatgatgatttttttttcata 6312366  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  6312367 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 6312435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 37391420 - 37391534
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||       ||||    
T  37391420 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatata-aaaattaagatgatatttttttcata 37391518  T
Q  101 tcgaatttaaaatcta 116  Q
    ||||||||||||||||    
T  37391519 tcgaatttaaaatcta 37391534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16748940 - 16749050
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||       ||||    
T  16748940 ataattagtacaagtataataatccaaatatttttatcgttatattcaatgtttagatatttcaaaatatatacaaaattaaaattatatttttttcata 16749039  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  16749040 tcgaatttaaa 16749050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25075130 - 25075214
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25075130 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 25075214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16040969 - 16040885
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16040969 ataattagtacaagtataataatccatatatttttatcgttatatgcaatgtttagatatttcaaaatatatataaaattaagat 16040885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48776602 - 48776683
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    ||||||| ||||||||||||||  |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  48776602 ataattaatacaagtataataaaacaaatactttaatcgatatatgcaatgtttagatatttcaaaatatatacaaaattaa 48776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2454028 - 2454110
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  2454028 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttaaatatttcaaaatatatacaaaattaagat 2454110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7101913 - 7101831
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  7101913 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttagatatttcaaattatatacaaaattaagat 7101831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 28960998 - 28960934
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28960998 aatccaaatactttaatcgttatttgcaatgtttagatatttcaaaatatatacaaaattaagat 28960934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36206161 - 36206082
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  ||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  36206161 ataattagtataagtataa--atctaaatactttaatcattatatgcaatgtttagatatttcaaaatatatacaaaattaa 36206082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 48240065 - 48240147
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    ||||||| || ||||||||  ||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  48240065 ataattaatataagtataa--atccaaatagtttaatcgttatgtgcaatgtttatatatttcaaaatatatacaaaattaagat 48240147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 16043289 - 16043225
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||| |||||||| ||||||| ||| ||||||||||||||| |||||||||||||    
T  16043289 aatccaaatactttgatcgttatgtgcaatggttacatatttcaaaatatagacaaaattaagat 16043225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 12450875 - 12450841
Alignment:
Q  48 aatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||||||||||||||||||||||||||||    
T  12450875 aatgtttagatatttcaaaatatatacaaaattaa 12450841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 16040823 - 16040771
Alignment:
Q  108 taaaatctatatatttgataaaaaagaattttatttccccgtgctggcacggg 160  Q
    |||||||||||||| |||||||||||  ||||||||||||||||  |||||||    
T  16040823 taaaatctatatatatgataaaaaagttttttatttccccgtgccagcacggg 16040771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 50215 - 50383
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||       ||||    
T  50215 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaataaagatgatatttttttcata 50314  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||   ||||||| ||||||    
T  50315 tcgaatttaaaatctatacatttgatcaaaaaagatttttatttccccgtgccaacacgggtcactata 50383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 25219844 - 25220012
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  25219844 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 25219943  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| ||||| |  ||||| ||||||||||| |||||||| ||||||    
T  25219944 tcgaatttaaaatctatacatttgatcaaaaatgttttttaattccccgtgctagcacgggtcactata 25220012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 7780689 - 7780533
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  7780689 ataattagtaaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcata 7780595  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 161  Q
    |||||||||||||||| | ||||||| |||||| || |||||||||||||||||||||||||    
T  7780594 tcgaatttaaaatctacacatttgatcaaaaaaaaaatttatttccccgtgctggcacgggt 7780533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 7820779 - 7820623
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  7820779 ataattagtaaaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcata 7820685  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 161  Q
    |||||||||||||||| | ||||||| |||||| || |||||||||||||||||||||||||    
T  7820684 tcgaatttaaaatctacacatttgatcaaaaaaaaaatttatttccccgtgctggcacgggt 7820623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 30306085 - 30305922
Alignment:
Q  3 aattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatc 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||    
T  30306085 aattagtacaagtataa-aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatc 30305987  T
Q  103 gaatttaaaatctatatatttgataaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||| ||||||||||||| ||  |||||| || |||||||||| ||| ||||||    
T  30305986 gaatttaaaatctatacatttgataaaaaaaaaaattattt-cctgtgctggcacaggtcactata 30305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37915312 - 37915422
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  37915312 ataattagtacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 37915411  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  37915412 tcgaatttaaa 37915422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 21114950 - 21115061
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatac-aaaattaagattatannnnnnncat 99  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||    
T  21114950 ataattagtataggtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaaattaagattatatatttttcat 21115049  T
Q  100 atcgaatttaaa 111  Q
    ||||||||||||    
T  21115050 atcgaatttaaa 21115061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 14764566 - 14764486
Alignment:
Q  9 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 89  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14764566 tacaagtataacaatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 14764486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31979799 - 31979887
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 89  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  31979799 ataattagtacaagtataataatccaaatactttgatcgttatatgcaatgtttagctattttgaaatatatacaaaattaagattata 31979887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33862660 - 33862724
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaa 65  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  33862660 ataattagtacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaa 33862724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13424575 - 13424496
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13424575 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 13424496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 14713206 - 14713145
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14713206 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 14713145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 14713069 - 14713008
Alignment:
Q  108 taaaatctatatatttgataaaaa-agaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| ||||||| |||| ||  |||||||||||||||||||||||||| ||||||    
T  14713069 taaaatctatacatttgatcaaaatagttttttatttccccgtgctggcacgggtcactata 14713008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 31979949 - 31980007
Alignment:
Q  111 aatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| | || |||||||  |||||||||||||||||||||||||| ||||||    
T  31979949 aatctatatatataatcaaaaaagctttttatttccccgtgctggcacgggtcactata 31980007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 29841 - 30012
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttat---atgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnnc 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||| |||       |    
T  29841 ataattagtacaagtataataatccaaatatttttatcattattatatgcaatgtttagatatttcaaaatatatacaaaattaagataatatttttttc 29940  T
Q  98 atatcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  29941 atatcgaatttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 30012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 13408 - 13232
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  13408 ataattagtacaagtataataatttaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 13309  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagta 176  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||||| ||||||  ||| || ||||||||||||||    
T  13308 tcgaatttaaaatctatacatttgatcaaaaaagttttttatttccctgtgctgaaacgagtcactatatactagta 13232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 55560243 - 55560410
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  55560243 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 55560342  T
Q  101 tcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||| ||||||| |||||||  |||| ||| |||||| |||||||||| ||||||    
T  55560343 tcgaatttaaaatctatacatttgatcaaaaaagttttttgttt-cccgtgttggcacgggtcactata 55560410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 6244849 - 6244698
Alignment:
Q  18 aataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatttaaaatctat 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  6244849 aataatccaaatatttttatcgttgtatgcaatgtttagatatttcaaaatatatacaaaattaagattatatttttttcatatcgaatttaaaatctat 6244750  T
Q  118 atatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    | ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  6244749 acatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 6244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 49788104 - 49788273
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncat 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||    
T  49788104 ataattagtacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcat 49788203  T
Q  100 atcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||||||||||| |||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  49788204 atcgaatttaaaatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 49788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 31920414 - 31920304
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  31920414 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 31920315  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  31920314 tcgaatttaaa 31920304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 35854851 - 35854737
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||       ||||    
T  35854851 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatata-aaaattaagatgatatttttttcata 35854753  T
Q  101 tcgaatttaaaatcta 116  Q
    ||||||||||||||||    
T  35854752 tcgaatttaaaatcta 35854737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 49709121 - 49709033
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 89  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  49709121 ataattagtacaggtataataatccaaatatttttatcgttatatgcaatgtttagatattttaaaatatatacaaaattaaaattata 49709033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 786860 - 786752
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||||| |||       ||||    
T  786860 ataattagtacaagtataataatccaaatacttttatcgttat--gcaatgtttagatatttcaaaatatatacaaagttaagatgatatttttttcata 786763  T
Q  101 tcgaatttaaa 111  Q
    |||||||||||    
T  786762 tcgaatttaaa 786752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38517499 - 38517436
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttca 64  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38517499 ataattagtacaagtataataatccagatatttttatcgttatatgcaatgtttagatatttca 38517436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 618590 - 618672
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  618590 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaagat 618672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 37532700 - 37532761
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  37532700 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 37532761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1859621 - 1859565
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttaga 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  1859621 ataattagtacaagtataataatccaaatatttttatcgttatatacaatatttaga 1859565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 38517437 - 38517365
Alignment:
Q  97 catatcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||| ||||||    
T  38517437 catatcgaatttaaaatctatacatttgatcaaaaaagatttttatttccccgtgctgacacgggtcactata 38517365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 1859545 - 1859474
Alignment:
Q  97 catatcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||||||| ||| ||| |||||||  |||||||||||||||||||||||||| ||||||    
T  1859545 catatcgaatttaaaatctatacatt-gatcaaaaaagttttttatttccccgtgctggcacgggtcactata 1859474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 37532836 - 37532897
Alignment:
Q  108 taaaatctatatatttgataaaaa-agaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| ||||||| |||| ||  |||||||||||||||||||||||||| ||||||    
T  37532836 taaaatctatacatttgatcaaaacagttttttatttccccgtgctggcacgggtcactata 37532897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37 - 168
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||    
T  37 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcata 136  T
Q  101 tcgaatttaaaatctatatatttgataaaaaa 132  Q
    |||||||||||||||||| ||||||| |||||    
T  137 tcgaatttaaaatctatacatttgatcaaaaa 168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 133142 - 133230
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  133142 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 133230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 310970 - 311058
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 89  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  310970 ataattagtacatgtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 311058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10090 - 10006
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10090 ataattagtacaagtataataatccaaatactttcatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 10006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 23538 - 23454
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23538 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttatatatttcaaaatatatacaaaattaagat 23454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18403 - 18315
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 89  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  18403 ataattagtacaagtataataatccaaatactttgatcgttatatgcaatgtttagctattttgaaatatatacaaaattaagattata 18315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 23391 - 23330
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  23391 taaaatctatacatatgattaaaaaagttttttatttccccgtgctggcacgggtcactata 23330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 18253 - 18195
Alignment:
Q  111 aatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 168  Q
    ||||||||||| | || |||||||  |||||||||||||||||||||||||| ||||||    
T  18253 aatctatatatataatcaaaaaagctttttatttccccgtgctggcacgggtcactata 18195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 164471 - 164387
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  164471 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatattttaaattatatacaaaattaagat 164387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 172586 - 172502
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  172586 ataattagtacaagtataataatccaaatacttttatcgttatatgcaatgtttagatattttaaattatatacaaaattaagat 172502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 164324 - 164270
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 161  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  164324 taaaatctatatatatgatcaaaaaagttttttatttccccgtgctggcacgggt 164270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 172439 - 172385
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 161  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  172439 taaaatctatatatatgatcaaaaaagttttttatttccccgtgctggcacgggt 172385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 1001 - 1083
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||  ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1001 ataattagtataagtataa--atccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 1083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17956 - 17871
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||||| |||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  17956 ataattagtataagtataataaatccaaatactttaatcgttatgtgcaatgtttaaatatttcaaaatatatacaaaattaagat 17871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13437 - 13355
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||||||||  ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  13437 ataattagtataagtataa--atccaaatattttaatcgttacgtgcaatgtttagatatttcaaaatatatacaaaattaagat 13355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6506 - 6588
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6506 ataattagtataagtataataaatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatataaaattaa 6588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 6663 - 6724
Alignment:
Q  108 taaaatctatatatttgataaaaaagaattttatttccccgtgc-tggcacgggttactata 168  Q
    ||||||||||| ||||||||||||||  |||||||||||||||| |||||||||| ||||||    
T  6663 taaaatctatacatttgataaaaaagttttttatttccccgtgcttggcacgggtcactata 6724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 633 - 551
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||||| | |||||| ||  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  633 ataattagtataagtataataaattcaaatacttcaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 185514 - 185432
Alignment:
Q  1 ataattagtacaagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||||||||||| | |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  185514 ataattagtataagtataataaatacaaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaa 185432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 98113 - 98174
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  98113 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 98174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 98249 - 98311
Alignment:
Q  108 taaaatctatatatttgat-aaaaaagaattttatttccccgtgc-tggcacgggttactata 168  Q
    ||||||||||| ||||||| |||||||  |||||||||||||||| |||||||||| ||||||    
T  98249 taaaatctatacatttgatgaaaaaagttttttatttccccgtgcttggcacgggtcactata 98311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3592 - 3671
Alignment:
Q  1 ataattagtacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    ||||||| || ||||||||  ||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  3592 ataattattataagtataa--atccaaagactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 3671  T

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Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 125152 - 125091
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 82  Q
    |||||||||| ||| |||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  125152 aatccaaatactttaatcgctatgtgcaatgtttagatattgcaaaatatatacaaaattaa 125091  T

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Target: scaffold1370 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 1462 - 1528
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatat--ttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||| ||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  1462 aatccaaatactttaatctttatgtgcaatgtttagatatatttcaaaatatatacaaaattaagat 1528  T

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Target: scaffold0107 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 44933 - 44867
Alignment:
Q  21 aatccaaatatttttatcgttatatgcaatgtttagatat--ttcaaaatatatacaaaattaagat 85  Q
    |||||||||| ||| ||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  44933 aatccaaatactttaatctttatgtgcaatgtttagatatatttcaaaatatatacaaaattaagat 44867  T

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Target: scaffold0533 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 11609 - 11536
Alignment:
Q  97 catatcgaatttaaaatctatatatttgat-aaaaaagaatttt-atttccccgtgctggcacgggttactata 168  Q
    |||||||||||||||||||||| |||| || |||||||  |||| |||||||||||||||||||||| ||||||    
T  11609 catatcgaatttaaaatctatacatttaatcaaaaaagtttttttatttccccgtgctggcacgggtcactata 11536  T

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