View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8846_high_2 (Length: 384)
Name: NF8846_high_2
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 376
Target Start/End: Complemental strand, 34824669 - 34824306
Alignment:
| Q |
6 |
tgagatggacatcacttgtttagttatcatagatgaataaatacatcgtgccttacaatacttgcgtgctttgtgctaacataagaccttcacgctatag |
105 |
Q |
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| T |
34824669 |
tgagatggacattacttgtttagttatcatagatgaataaatacatcgtgccttccaatacttgcgtgctttgtgctt---ttggatgt----gctatgg |
34824577 |
T |
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| Q |
106 |
ttagagagtatgagcaacaaggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacattta |
205 |
Q |
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| T |
34824576 |
ttagagagtatgagcaacaaggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacattta |
34824477 |
T |
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| Q |
206 |
taaacggcaaataaaacccgttccaactcagccatatataagaacgttaattaattgtcgttcaactttacagtaagatccttgtgagtcatcaaaggtt |
305 |
Q |
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| T |
34824476 |
taaacggcaaataaaacccgttccaactcagccatatataagaacgttaattaattgttgttcaactttacagtaagatccttgtgagtcatcaaaggtt |
34824377 |
T |
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| Q |
306 |
atactggatgatggcttgtactggagttgctatgatgggttctttgcaccaagctcatttgactaacttgc |
376 |
Q |
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| T |
34824376 |
atactggatgatggcttgtactggagttgctatgatgggttctttgcaccaagctcatttgactaacttgc |
34824306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 44148463 - 44148423
Alignment:
| Q |
313 |
atgatggcttgtactggagttgctatgatgggttctttgca |
353 |
Q |
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| T |
44148463 |
atgatggcgtgtactggagttgctatcatggcttctttgca |
44148423 |
T |
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