View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8846_high_3 (Length: 301)
Name: NF8846_high_3
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 4081923 - 4081642
Alignment:
| Q |
1 |
gtggtgataattctattccagccatgagccaagagaattcttttgaaacttttgcaaaacctagtccaaagaattatcctgctagaattgcagttattgg |
100 |
Q |
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| T |
4081923 |
gtggtgatagttctattccagccatgagccaagagaattatttcgaaactttcgcaaaacctagtccaaagaattatcctgctagaattgcagttattgg |
4081824 |
T |
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| Q |
101 |
agatttgggactcacaagtaattctacaacaactattgatcatctgagttacaatgatccttcaatgattttaatgattggagatttaacttatgcaaat |
200 |
Q |
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| T |
4081823 |
agatttaggcctcacaagtaattcttcaacaacggttgatcatctgagttacaacgatccttcaatgattctaatgattggtgatttaacatatgcaaat |
4081724 |
T |
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| Q |
201 |
cagtatcttacaactggtggaaagggagcttcctgtttttcgtgtgcgtttccagatgcaccgatcagagagacctatcaac |
282 |
Q |
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| T |
4081723 |
cagtatcttacaactggtggaaagggagcttcgtgcttttcgtgtgcgtttccagatgcaccgattagagagacctatcaac |
4081642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 9578077 - 9578031
Alignment:
| Q |
116 |
aagtaattctacaacaactattgatcatctgagttacaatgatcctt |
162 |
Q |
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| T |
9578077 |
aagtaattctacaacaactattgaatatctaatttacaatgatcctt |
9578031 |
T |
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