View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8846_high_4 (Length: 299)

Name: NF8846_high_4
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8846_high_4
NF8846_high_4
[»] chr8 (20 HSPs)
chr8 (1-287)||(13576888-13577174)
chr8 (179-218)||(29376892-29376931)
chr8 (182-224)||(13357466-13357508)
chr8 (180-270)||(34997450-34997540)
chr8 (193-267)||(40167327-40167400)
chr8 (170-257)||(10601745-10601831)
chr8 (181-216)||(33373785-33373820)
chr8 (182-268)||(37999401-37999487)
chr8 (183-217)||(2188541-2188575)
chr8 (182-224)||(6447183-6447225)
chr8 (182-224)||(21557427-21557469)
chr8 (181-267)||(38763498-38763583)
chr8 (186-219)||(13004163-13004196)
chr8 (180-261)||(17898071-17898151)
chr8 (182-219)||(19163566-19163603)
chr8 (179-224)||(33451374-33451419)
chr8 (185-229)||(2958422-2958466)
chr8 (180-224)||(7553671-7553715)
chr8 (193-229)||(9663074-9663110)
chr8 (180-224)||(23852903-23852947)
[»] chr1 (40 HSPs)
chr1 (180-260)||(24752637-24752717)
chr1 (180-267)||(39452452-39452539)
chr1 (185-236)||(29450995-29451046)
chr1 (181-219)||(8266216-8266254)
chr1 (187-261)||(14520943-14521016)
chr1 (181-219)||(47692935-47692973)
chr1 (186-235)||(48646740-48646789)
chr1 (185-229)||(28053261-28053305)
chr1 (181-260)||(42045362-42045440)
chr1 (180-219)||(6423792-6423831)
chr1 (188-267)||(9265819-9265897)
chr1 (181-224)||(30678838-30678881)
chr1 (180-267)||(34766852-34766938)
chr1 (181-236)||(37037340-37037395)
chr1 (193-272)||(39392914-39392993)
chr1 (181-219)||(1091172-1091210)
chr1 (183-273)||(2613717-2613805)
chr1 (185-219)||(2636785-2636819)
chr1 (182-224)||(2884473-2884515)
chr1 (186-224)||(10356208-10356246)
chr1 (181-267)||(17861199-17861285)
chr1 (180-230)||(20006062-20006112)
chr1 (182-224)||(26803476-26803518)
chr1 (181-215)||(27172756-27172790)
chr1 (182-224)||(27853349-27853391)
chr1 (178-224)||(41573294-41573340)
chr1 (181-219)||(52267757-52267795)
chr1 (186-271)||(8736433-8736517)
chr1 (182-267)||(15602160-15602244)
chr1 (180-224)||(1794588-1794632)
chr1 (181-217)||(6094415-6094451)
chr1 (182-218)||(17280115-17280151)
chr1 (182-250)||(21400023-21400090)
chr1 (181-217)||(22336174-22336210)
chr1 (180-224)||(29935975-29936019)
chr1 (180-224)||(37705117-37705161)
chr1 (188-228)||(40021370-40021410)
chr1 (180-224)||(45140031-45140075)
chr1 (184-224)||(49875624-49875664)
chr1 (180-224)||(52441536-52441580)
[»] chr2 (28 HSPs)
chr2 (182-267)||(2256965-2257049)
chr2 (182-228)||(14414916-14414962)
chr2 (194-260)||(19595468-19595534)
chr2 (201-267)||(21870878-21870944)
chr2 (182-224)||(34977198-34977240)
chr2 (182-267)||(9383192-9383276)
chr2 (182-219)||(29798547-29798584)
chr2 (180-216)||(8761597-8761633)
chr2 (183-219)||(39340279-39340315)
chr2 (180-235)||(7052765-7052820)
chr2 (182-229)||(11817366-11817413)
chr2 (180-215)||(19814885-19814920)
chr2 (180-219)||(41763908-41763947)
chr2 (182-224)||(13196694-13196736)
chr2 (181-267)||(17736786-17736871)
chr2 (182-224)||(18789409-18789451)
chr2 (185-235)||(19976150-19976200)
chr2 (181-267)||(20455884-20455969)
chr2 (182-260)||(24592836-24592913)
chr2 (181-235)||(32063602-32063656)
chr2 (183-217)||(36615065-36615099)
chr2 (182-224)||(44526122-44526164)
chr2 (180-217)||(40257176-40257213)
chr2 (182-219)||(41542830-41542867)
chr2 (194-259)||(41859858-41859922)
chr2 (180-224)||(4122038-4122082)
chr2 (180-267)||(17778975-17779061)
chr2 (180-224)||(45032685-45032729)
[»] scaffold0458 (1 HSPs)
scaffold0458 (180-267)||(11134-11221)
[»] chr5 (39 HSPs)
chr5 (181-235)||(31561358-31561412)
chr5 (181-259)||(11637563-11637640)
chr5 (180-269)||(22555223-22555311)
chr5 (177-224)||(18995633-18995680)
chr5 (180-266)||(37932322-37932407)
chr5 (186-267)||(10032257-10032337)
chr5 (179-224)||(10199010-10199055)
chr5 (181-269)||(6489000-6489087)
chr5 (195-267)||(6894103-6894174)
chr5 (180-224)||(31198701-31198745)
chr5 (185-229)||(32283576-32283620)
chr5 (181-217)||(33645721-33645757)
chr5 (181-229)||(40782568-40782616)
chr5 (181-260)||(6624769-6624847)
chr5 (185-224)||(17046331-17046370)
chr5 (180-219)||(29178439-29178478)
chr5 (181-216)||(40837936-40837971)
chr5 (181-219)||(8543569-8543607)
chr5 (180-270)||(11844418-11844507)
chr5 (185-219)||(15148720-15148754)
chr5 (182-272)||(16089444-16089533)
chr5 (182-224)||(18589892-18589934)
chr5 (181-219)||(28207125-28207163)
chr5 (182-224)||(29695009-29695051)
chr5 (186-224)||(41650964-41651002)
chr5 (180-217)||(689539-689576)
chr5 (179-236)||(1808607-1808663)
chr5 (182-219)||(14880406-14880443)
chr5 (180-224)||(1512847-1512891)
chr5 (180-224)||(3389154-3389198)
chr5 (187-267)||(11647196-11647275)
chr5 (180-224)||(19248471-19248515)
chr5 (180-224)||(22522826-22522870)
chr5 (180-224)||(26034633-26034677)
chr5 (180-216)||(28736894-28736930)
chr5 (180-236)||(38495134-38495189)
chr5 (180-224)||(40027789-40027833)
chr5 (180-224)||(40056615-40056659)
chr5 (180-224)||(42505864-42505908)
[»] chr3 (41 HSPs)
chr3 (185-267)||(47313354-47313436)
chr3 (181-267)||(32843245-32843330)
chr3 (181-267)||(44582717-44582803)
chr3 (185-229)||(25874127-25874171)
chr3 (180-267)||(53996291-53996377)
chr3 (181-219)||(7557564-7557602)
chr3 (182-260)||(29631180-29631257)
chr3 (181-237)||(8127456-8127511)
chr3 (180-219)||(7738661-7738700)
chr3 (181-224)||(10498720-10498763)
chr3 (188-267)||(25441483-25441561)
chr3 (188-235)||(27532834-27532881)
chr3 (181-224)||(46903901-46903944)
chr3 (181-224)||(51882225-51882268)
chr3 (181-267)||(1149052-1149137)
chr3 (182-224)||(7464516-7464558)
chr3 (181-219)||(21506788-21506826)
chr3 (181-215)||(22251495-22251529)
chr3 (185-267)||(32909284-32909365)
chr3 (182-224)||(38130984-38131026)
chr3 (181-219)||(39481134-39481172)
chr3 (181-219)||(44579629-44579667)
chr3 (183-260)||(25340914-25340990)
chr3 (182-219)||(28244134-28244171)
chr3 (179-224)||(34899088-34899133)
chr3 (180-229)||(40492996-40493045)
chr3 (179-236)||(54018420-54018476)
chr3 (180-267)||(334830-334917)
chr3 (180-216)||(2186460-2186496)
chr3 (180-224)||(7827500-7827544)
chr3 (180-224)||(7829888-7829932)
chr3 (183-219)||(12043127-12043163)
chr3 (188-224)||(19468451-19468487)
chr3 (183-267)||(20370265-20370347)
chr3 (180-224)||(21331442-21331486)
chr3 (180-224)||(27432226-27432270)
chr3 (180-224)||(34326008-34326052)
chr3 (183-267)||(48263947-48264031)
chr3 (180-224)||(49787688-49787732)
chr3 (181-217)||(51250265-51250301)
chr3 (180-224)||(53633642-53633686)
[»] chr6 (23 HSPs)
chr6 (182-267)||(4494855-4494938)
chr6 (180-219)||(17278962-17279001)
chr6 (180-259)||(34828298-34828377)
chr6 (182-267)||(331869-331953)
chr6 (182-267)||(2726400-2726484)
chr6 (181-267)||(788859-788944)
chr6 (181-224)||(3358384-3358427)
chr6 (184-219)||(8831203-8831238)
chr6 (181-224)||(28898849-28898892)
chr6 (181-224)||(32053781-32053824)
chr6 (185-219)||(2108722-2108756)
chr6 (182-216)||(5271387-5271421)
chr6 (187-261)||(14679124-14679197)
chr6 (180-237)||(12735256-12735312)
chr6 (182-219)||(16890478-16890515)
chr6 (183-224)||(20744133-20744174)
chr6 (183-224)||(28951394-28951435)
chr6 (188-224)||(361754-361790)
chr6 (180-259)||(5655297-5655376)
chr6 (179-219)||(7885532-7885572)
chr6 (180-224)||(9677227-9677271)
chr6 (180-224)||(29740474-29740518)
chr6 (180-224)||(31971521-31971565)
[»] scaffold0009 (1 HSPs)
scaffold0009 (183-235)||(189605-189657)
[»] chr7 (43 HSPs)
chr7 (181-235)||(20243248-20243302)
chr7 (180-224)||(8883545-8883589)
chr7 (181-219)||(4227558-4227596)
chr7 (178-260)||(19416504-19416585)
chr7 (181-235)||(38728201-38728255)
chr7 (181-270)||(2916095-2916182)
chr7 (182-259)||(9522906-9522982)
chr7 (182-219)||(21993176-21993213)
chr7 (180-237)||(47342669-47342725)
chr7 (180-224)||(48980479-48980523)
chr7 (181-224)||(5041332-5041375)
chr7 (181-260)||(10025987-10026065)
chr7 (181-224)||(19626550-19626593)
chr7 (180-219)||(24839480-24839519)
chr7 (181-224)||(27263334-27263377)
chr7 (181-224)||(27270228-27270271)
chr7 (180-267)||(27462419-27462505)
chr7 (180-219)||(27993059-27993098)
chr7 (181-224)||(34448635-34448678)
chr7 (180-219)||(46220980-46221019)
chr7 (181-219)||(1399155-1399193)
chr7 (182-224)||(5526719-5526761)
chr7 (181-267)||(7388022-7388107)
chr7 (182-224)||(10244721-10244763)
chr7 (181-259)||(19793797-19793875)
chr7 (181-219)||(31038552-31038590)
chr7 (181-267)||(35142132-35142217)
chr7 (181-267)||(37624536-37624621)
chr7 (182-224)||(39801700-39801742)
chr7 (182-236)||(44454506-44454559)
chr7 (188-229)||(34722041-34722082)
chr7 (182-219)||(46551989-46552026)
chr7 (179-236)||(48103688-48103744)
chr7 (180-236)||(4905268-4905323)
chr7 (185-249)||(8879748-8879811)
chr7 (180-224)||(21099798-21099842)
chr7 (181-217)||(21136824-21136860)
chr7 (188-224)||(22991416-22991452)
chr7 (192-224)||(23413071-23413103)
chr7 (183-219)||(30793076-30793112)
chr7 (180-224)||(32228431-32228475)
chr7 (199-235)||(36343550-36343586)
chr7 (180-224)||(37930036-37930080)
[»] scaffold0015 (1 HSPs)
scaffold0015 (181-235)||(75176-75230)
[»] chr4 (30 HSPs)
chr4 (182-224)||(43034367-43034409)
chr4 (181-267)||(52270013-52270098)
chr4 (182-267)||(23809943-23810027)
chr4 (186-267)||(56361796-56361877)
chr4 (178-270)||(35021447-35021538)
chr4 (181-237)||(51002280-51002335)
chr4 (181-224)||(2186358-2186401)
chr4 (181-220)||(14137043-14137082)
chr4 (181-224)||(15170124-15170167)
chr4 (180-267)||(16431608-16431694)
chr4 (180-219)||(30780121-30780160)
chr4 (181-224)||(43722758-43722801)
chr4 (193-236)||(46853867-46853910)
chr4 (181-219)||(7030923-7030961)
chr4 (181-267)||(24664974-24665059)
chr4 (182-216)||(38340353-38340387)
chr4 (179-224)||(7230271-7230316)
chr4 (183-228)||(9935957-9936002)
chr4 (182-219)||(9946421-9946458)
chr4 (182-267)||(19588148-19588232)
chr4 (181-218)||(20043223-20043260)
chr4 (183-216)||(24885833-24885866)
chr4 (179-224)||(29908047-29908092)
chr4 (181-266)||(31879862-31879945)
chr4 (182-267)||(32180824-32180908)
chr4 (182-267)||(35287490-35287574)
chr4 (183-224)||(39842037-39842078)
chr4 (179-224)||(42845016-42845061)
chr4 (180-224)||(8494979-8495023)
chr4 (180-224)||(13276121-13276165)
[»] scaffold0021 (1 HSPs)
scaffold0021 (181-269)||(161134-161221)
[»] scaffold0743 (1 HSPs)
scaffold0743 (183-230)||(1438-1485)
[»] scaffold0011 (1 HSPs)
scaffold0011 (180-219)||(185255-185294)
[»] scaffold0328 (1 HSPs)
scaffold0328 (197-267)||(6988-7058)
[»] scaffold0040 (1 HSPs)
scaffold0040 (180-217)||(56776-56813)
[»] scaffold0050 (1 HSPs)
scaffold0050 (183-267)||(53363-53446)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 13576888 - 13577174
Alignment:
Q  1 cacgggcatacaaatggtatgctagtgtatacatatttcactctttctatagccatacactatatatagaataagagtttactatgcaatcaaatactcc 100  Q
    ||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13576888 cacggtcatacaaatggtatgcttgtgtatgcatatttccctctttctatagccatacactatatataggataagagtttactatgcaatcaaatactcc 13576987  T
Q  101 taaa-gaggagtaaagtagtttagacattttcaaattgttttgtaaaacgatcacaactcatttaaacgctgatttagagttgtcctcgtgatcttaact 199  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  13576988 taaaagaggagtaaagtagtttagacattttcaaattgttttgtaaaacgatcacaactcatttaaacgctgatttagagttgtcctcctgagcttaact 13577087  T
Q  200 cagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataaacgctgatttagagaat 287  Q
    |||||||||||||||||||| ||| |||||| ||| | |||||| |||||||| |||||||| ||||| |||||||||||||||||||    
T  13577088 cagttggtatggacaatgcataatcatatgcaagg-tctggagttgaaccccgaccaccacaaaaaaaaaaacgctgatttagagaat 13577174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 29376892 - 29376931
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgc 218  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  29376892 gttgtcctcgtgagcttaactcagttggtatggacaatgc 29376931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 13357508 - 13357466
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  13357508 gtcctcgtgagcttaactcagttggtatggacaatgcataata 13357466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 34997450 - 34997540
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataa 270  Q
    |||||||||||| |||| |||||||| ||| ||||||||| ||  |||||| ||||  |||  ||||||||||| ||||||| ||||||||    
T  34997450 ttgtcctcgtgagcttagctcagttgatatagacaatgcataaatatatgcaaggtcatgggttcgaaccccggacaccacaaaaaaataa 34997540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 40167327 - 40167400
Alignment:
Q  193 cttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||||||||||||||||||| ||| |||| | |||||  ||| || |||||||||||||||| |||||    
T  40167327 cttaactcagttggtatggacaatgcataat-atatacaaggttcgggattcaaaccccggccaccacaaaaaaa 40167400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 10601745 - 10601831
Alignment:
Q  170 tgatttagagttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccac 257  Q
    ||||||| |||| ||| ||||| ||||| ||||||||||||||||||||| ||| |||||| || ||  ||| || ||||||||||||    
T  10601745 tgatttatagttatccgcgtgagcttaattcagttggtatggacaatgcataat-atatgcaagattcgggattcaaaccccggccac 10601831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 33373820 - 33373785
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaat 216  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33373820 tgtcctcgtgaccttaactcagttggtatggacaat 33373785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 37999487 - 37999401
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtc-gaaccccggccaccacacaaaaat 268  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||| |||| | ||  ||  |||||||||||||||| ||||||    
T  37999487 gtcctcgtgagcttaactcagttggtatggataatgcataat-atatgcaaggtatagggttctaaaccccggccaccacaaaaaaat 37999401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 2188541 - 2188575
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatg 217  Q
    ||||||||| |||||||||||||||||||||||||    
T  2188541 tcctcgtgagcttaactcagttggtatggacaatg 2188575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 6447183 - 6447225
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||  |||||||||||||||||||||||||| ||||    
T  6447183 gtcctcgtgagtttaactcagttggtatggacaatgcataata 6447225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 21557427 - 21557469
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||||||||||| |||||||||||||| ||||    
T  21557427 gtcctcgtgagcttaactcagttagtatggacaatgcataata 21557469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 38763583 - 38763498
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| | || |||||||||| ||||||||||| ||| |||||| |||| | ||  |||||||| |||||||||| |||||    
T  38763583 tgtcctcgtgagcatagctcagttggtttggacaatgcataat-atatgcaaggtctggggttcgaaccctggccaccacaaaaaaa 38763498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 13004163 - 13004196
Alignment:
Q  186 tcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||| |||||||||||||||||||||||||||    
T  13004163 tcgtgagcttaactcagttggtatggacaatgca 13004196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 17898071 - 17898151
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccaca 261  Q
    ||||||| |||| |||||||||||||||||||||||  || ||| |||||| ||||   ||| || ||||||||||||||||    
T  17898071 ttgtcctagtgagcttaactcagttggtatggacaaaacataat-atatgcaaggtccgggattctaaccccggccaccaca 17898151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 19163603 - 19163566
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  19163603 gtcctcgtgagcttagctcagttggtatggacaatgca 19163566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 33451419 - 33451374
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||| |||| ||||||||||||||| |||||| ||||    
T  33451419 gttgtcctcgtgagcttagctcagttggtatggataatgcataata 33451374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 2958422 - 2958466
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    ||||||| ||||  ||||||||||||||||||||| |||||||||    
T  2958422 ctcgtgagcttagttcagttggtatggacaatgcataataatatg 2958466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 7553671 - 7553715
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||  ||||||||||||||| |||||||||| ||||    
T  7553671 ttgtcctcgtgagtttaactcagttggtagggacaatgcataata 7553715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 9663110 - 9663074
Alignment:
Q  193 cttaactcagttggtatggacaatgcaaaataatatg 229  Q
    |||| |||||||||||||||||||||| |||||||||    
T  9663110 cttagctcagttggtatggacaatgcataataatatg 9663074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 23852903 - 23852947
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| |||||| ||||||||||||||| ||||    
T  23852903 ttgtcctcgtgagcttagctcagtcggtatggacaatgcataata 23852947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 24752717 - 24752637
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||||||| |||| | ||  ||||||||||||||||||    
T  24752717 ttgtcctcgtgagcttagctcagttggtatggacaatgcataataatatgcaaggtctggggttcgaaccccggccaccac 24752637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 39452452 - 39452539
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||||| |||| ||||||||||||| |||||||| || ||||||| |||| | ||| || |||||||||||||||| |||||    
T  39452452 ttgtcctcgtgagcttagctcagttggtatgaacaatgcataaaaatatgcaaggtctgggattcaaaccccggccaccacaaaaaaa 39452539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 29451046 - 29450995
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  29451046 ctcgtgagcttaactcagttggtatggacaatgcataataatatgcaaggtt 29450995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 8266254 - 8266216
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8266254 tgtcctcgtgatcttaactcagttggtatggacaatgca 8266216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 14520943 - 14521016
Alignment:
Q  187 cgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccaca 261  Q
    ||||| |||| |||||||||||||||||||||| || ||||||| | |||| ||  |||||||||||||||||||    
T  14520943 cgtgagcttagctcagttggtatggacaatgcataa-aatatgcaaagtttggggttcgaaccccggccaccaca 14521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 47692973 - 47692935
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  47692973 tgtcctcgtgagcttaactcagttggtatggacaatgca 47692935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 48646789 - 48646740
Alignment:
Q  186 tcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    |||||| |||||||||||| |||||||||||||| |||||||||| ||||    
T  48646789 tcgtgagcttaactcagtttgtatggacaatgcataataatatgcaaggt 48646740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 28053305 - 28053261
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  28053305 ctcgtgagcttaattcagttggtatggacaatgcataataatatg 28053261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 42045440 - 42045362
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggag-tcgaaccccggccaccac 260  Q
    ||||||||||| |||| |||||||||||||||||||||| ||| |||||| ||| | ||||| || |||||||||||||||    
T  42045440 tgtcctcgtgagcttagctcagttggtatggacaatgcataat-atatgcaagg-tctggagttcaaaccccggccaccac 42045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 6423831 - 6423792
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  6423831 ttgtcctcgtgagcttaactcagttggtatgaacaatgca 6423792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 9265897 - 9265819
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||| ||||||||||||||||||||||||| | ||| | |||| |||| | ||| || |||||||||||||||| |||||    
T  9265897 gtgaacttaactcagttggtatggacaatgtataat-acatgcaaggtctgggattcaaaccccggccaccacaaaaaaa 9265819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 30678881 - 30678838
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||    
T  30678881 tgtcctcgtgagcttaactcagttggtagggacaatgcataata 30678838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 34766852 - 34766938
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||| |||||| ||||||||||||||||||||||||| | ||| | |||| |||| | ||  ||||||| ||||||||||| |||||    
T  34766852 ttgtcttcgtgagcttaactcagttggtatggacaatgtataat-acatgcaaggtctggggttcgaacctcggccaccacaaaaaaa 34766938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 37037340 - 37037395
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    ||||||||||| ||||||| |||||||||||| |||| | |||||||||| |||||    
T  37037340 tgtcctcgtgagcttaactgagttggtatggataatgtataataatatgcaaggtt 37037395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 39392914 - 39392993
Alignment:
Q  193 cttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataaac 272  Q
    ||||||||||||||||   ||||| ||||||||||||  |||||  ||  || |||||||||||||||| ||||||||||    
T  39392914 cttaactcagttggtaaaaacaatacaaaataatatgtaaggttcggggttcaaaccccggccaccacaaaaaaataaac 39392993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 1091172 - 1091210
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  1091172 tgtcctcgtgagcttaactcagttggtatagacaatgca 1091210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 2613717 - 2613805
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataaacg 273  Q
    ||||||||| |||| |||||||||||||||||||||| || ||||||  |||||  ||  |||||||||| |||| ||| |||||||||||    
T  2613717 tcctcgtgagcttagctcagttggtatggacaatgcataa-aatatgtaaggttcggggttcgaaccccgaccacaaca-aaaaataaacg 2613805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 2636819 - 2636785
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  2636819 ctcgtgagcttaactcagttggtatggacaatgca 2636785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 2884515 - 2884473
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||    
T  2884515 gtcctcgtgaccttaactcagttgatatggacaatgcataata 2884473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 10356246 - 10356208
Alignment:
Q  186 tcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  10356246 tcgtgagcttaactcagttggtatggacaatgcataata 10356208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 17861199 - 17861285
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| ||||||||| |||||||||| ||| || | | |||||| |||| | ||  |||||||||| |||||||| |||||    
T  17861199 tgtcctcgtgagcttaactcaattggtatggataatacatagtgatatgcaaggtctagggttcgaaccccgaccaccacataaaaa 17861285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 20006062 - 20006112
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgc 230  Q
    ||||||||||||  ||||||||||||  |||||||||||| ||||||||||    
T  20006062 ttgtcctcgtgagattaactcagttgacatggacaatgcataataatatgc 20006112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 26803518 - 26803476
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||| |||||||||||||||||||||| ||||    
T  26803518 gtcctcgtgaacttagctcagttggtatggacaatgcataata 26803476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 27172790 - 27172756
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaa 215  Q
    ||||||||||| |||||||||||||||||||||||    
T  27172790 tgtcctcgtgagcttaactcagttggtatggacaa 27172756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 27853349 - 27853391
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||||||||||||||||| |||||||| ||||    
T  27853349 gtcctcgtgagcttaactcagttggtatgaacaatgcataata 27853391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 41573340 - 41573294
Alignment:
Q  178 agttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||||  ||||||||||||||| |||||||||| ||||    
T  41573340 agttgtcctcgtgagtttaactcagttggtagggacaatgcataata 41573294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 52267757 - 52267795
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  52267757 tgtcctcgtgagcttaactcagttggtaaggacaatgca 52267795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 8736433 - 8736517
Alignment:
Q  186 tcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataaa 271  Q
    |||||| |||||||  |||||||||||||||||| || ||||||| ||||   ||  || |||||||||||||||| |||||||||    
T  8736433 tcgtgagcttaacttggttggtatggacaatgcataa-aatatgcaaggtccggggttcaaaccccggccaccacaaaaaaataaa 8736517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 15602244 - 15602160
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| | || |||||||||||||||||||||| ||| |||||  ||| | |||  |||| |||||||||||||| |||||    
T  15602244 gtcctcgtgagcatagctcagttggtatggacaatgcataat-atatgtaaggatctgggttcgagccccggccaccacaaaaaaa 15602160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 1794588 - 1794632
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||    
T  1794588 ttgtcctcgtgagcttagctcagttagtatggacaatgcataata 1794632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 6094415 - 6094451
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  6094415 tgtcctcgtgagcttaactcagttggtatggataatg 6094451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 17280151 - 17280115
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgc 218  Q
    |||||||||| |||| |||||||||||||||||||||    
T  17280151 gtcctcgtgagcttagctcagttggtatggacaatgc 17280115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 21400090 - 21400023
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccc 250  Q
    |||||||||| |||| ||||||||||| |||||||||| ||| |||||| |||| ||||  ||||||||    
T  21400090 gtcctcgtgagcttagctcagttggtagggacaatgcataat-atatgcaaggtcttgggttcgaaccc 21400023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 22336210 - 22336174
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  22336210 tgtcctcttgagcttaactcagttggtatggacaatg 22336174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 29935975 - 29936019
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||| ||||  |||||||||||||||||||||||||| ||||    
T  29935975 ttgtccttgtgagtttaactcagttggtatggacaatgcataata 29936019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 37705117 - 37705161
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||||||||  |||||||||||||||| ||||    
T  37705117 ttgtcctcgtgaacttaactcaactggtatggacaatgcataata 37705161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 40021370 - 40021410
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaataatat 228  Q
    |||| |||| |||||||||||||||||||||| ||||||||    
T  40021370 gtgaacttagctcagttggtatggacaatgcataataatat 40021410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 45140075 - 45140031
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||| ||||| |||| |||||||||||||||||||||| ||||    
T  45140075 ttgtccccgtgagcttagctcagttggtatggacaatgcataata 45140031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 49875664 - 49875624
Alignment:
Q  184 cctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||| |||||||||||||||| |||||||||| ||||    
T  49875664 cctcgtgagcttaactcagttggtaaggacaatgcataata 49875624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 52441580 - 52441536
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| |||||||||||| ||||||||| ||||    
T  52441580 ttgtcctcgtgagcttagctcagttggtatagacaatgcataata 52441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 2256965 - 2257049
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |||||| |||| | ||  ||||||||||||||||||| |||||    
T  2256965 gtcctcgtgagcttaactcagttggtatggacaatgcataat-atatgcaaggtctggggttcgaaccccggccaccacaaaaaaa 2257049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 14414962 - 14414916
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatat 228  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  14414962 gtcctcgtgagcttaactcagttggtatggacaatgcataataatat 14414916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 19595534 - 19595468
Alignment:
Q  194 ttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    ||||||||||||||||| || ||||| |||||||||| |||| | ||  ||||||||||||||||||    
T  19595534 ttaactcagttggtatgaaccatgcataataatatgcaaggtctggggttcgaaccccggccaccac 19595468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 21870944 - 21870878
Alignment:
Q  201 agttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||||||||||| |||||||||| |||||  ||  |||||||||| |||||||| |||||    
T  21870944 agttggtatggacaatgcataataatatgcaaggttcggggttcgaaccccgaccaccacaaaaaaa 21870878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 34977198 - 34977240
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  34977198 gtcctcgtgagcttaactcagttggtatggacaatgcataata 34977240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 9383276 - 9383192
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| |||| |||||||||||||||||||||| ||| |||||| |||||| ||  |  |||||| ||||||||| |||||    
T  9383276 gtcctcgtgagcttagctcagttggtatggacaatgcataat-atatgcaaggtttggggtttcaacccctgccaccacaaaaaaa 9383192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 29798584 - 29798547
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| |||||||||||||||||||||||||||    
T  29798584 gtcctcgtgagcttaactcagttggtatggacaatgca 29798547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 8761633 - 8761597
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaat 216  Q
    |||||||||||| ||||||||||||||||||||||||    
T  8761633 ttgtcctcgtgagcttaactcagttggtatggacaat 8761597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 39340315 - 39340279
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||||| ||||||||||||||||||||||    
T  39340315 tcctcgtgatcttacctcagttggtatggacaatgca 39340279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 7052765 - 7052820
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    |||||| ||||| |||| ||||||||||| |||||||||| |||||||||| ||||    
T  7052765 ttgtccccgtgagcttagctcagttggtaaggacaatgcataataatatgcaaggt 7052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 11817413 - 11817366
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    |||||| ||| ||||||||||||||||||||||||| | |||||||||    
T  11817413 gtcctcatgagcttaactcagttggtatggacaatgtataataatatg 11817366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 19814920 - 19814885
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaa 215  Q
    |||||||||||| |||||||||||||||||||||||    
T  19814920 ttgtcctcgtgagcttaactcagttggtatggacaa 19814885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 41763947 - 41763908
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  41763947 ttgtcctcgtgaacttagctcagttggtatggacaatgca 41763908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 13196694 - 13196736
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||||||||||||||||| |||||||| ||||    
T  13196694 gtcctcgtgaacttaactcagttggtatgaacaatgcataata 13196736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 17736786 - 17736871
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| ||||||||||||| |||||||| || ||||||  || |  |||| ||||||| ||||||||||| |||||    
T  17736786 tgtcctcgtgagcttagctcagttggtatgaacaatgcataa-aatatgtaagatcatggattcgaacctcggccaccacaaaaaaa 17736871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 18789409 - 18789451
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||    
T  18789409 gtcctcgtgagcttaactcagttggtttggacaatgcataata 18789451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 19976150 - 19976200
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    |||||||  ||| |||||||||||||||||||||| |||||||||| ||||    
T  19976150 ctcgtgagtttagctcagttggtatggacaatgcataataatatgcaaggt 19976200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 20455884 - 20455969
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| |||| ||||||||||||||||| ||| |||||| ||||   ||  ||||| ||||||||||||| |||||    
T  20455884 tgtcctcgtgagcttagctcaattggtatggacaatgcataat-atatgcaaggtccggggttcgaatcccggccaccacaaaaaaa 20455969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 24592913 - 24592836
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    |||||||||| |||| ||||||||||| |||||||||| ||| |||||| |||| | ||  || |||||||||||||||    
T  24592913 gtcctcgtgaacttagctcagttggtagggacaatgcataat-atatgcaaggtctggggttcaaaccccggccaccac 24592836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 32063656 - 32063602
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    ||||||||||| |||| ||||||||||||||| |||||| || ||||||| ||||    
T  32063656 tgtcctcgtgagcttagctcagttggtatggataatgcataaaaatatgcaaggt 32063602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 36615099 - 36615065
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatg 217  Q
    ||||||||| |||||||||||||||||||||||||    
T  36615099 tcctcgtgagcttaactcagttggtatggacaatg 36615065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 44526122 - 44526164
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||| |||||||||||||||||||||| ||||    
T  44526122 gtcctcgtgagcttagctcagttggtatggacaatgcataata 44526164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 40257176 - 40257213
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  40257176 ttgtcctcgtgagcttaactcaattggtatggacaatg 40257213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 41542867 - 41542830
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  41542867 gtcctcgtgagcttaactcagttggtaaggacaatgca 41542830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 41859858 - 41859922
Alignment:
Q  194 ttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccacca 259  Q
    |||||||||||||||||||||||||| || ||||||| |||| | ||  || ||||||||||||||    
T  41859858 ttaactcagttggtatggacaatgcataa-aatatgcaaggtctggggttcaaaccccggccacca 41859922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 4122082 - 4122038
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| ||||| |||||||||||||||| ||||    
T  4122082 ttgtcctcgtgagcttagctcagctggtatggacaatgcataata 4122038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 17779061 - 17778975
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggag-tcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||||  |||||||||||||||  ||||||||| || ||| ||| ||| ||||||| |||||| |||||||||||| |||||    
T  17779061 ttgtcctcgtgagtttaactcagttggtagagacaatgcataa-aatttgcaagg-tttggagttcgaactccggccaccacaaaaaaa 17778975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 45032685 - 45032729
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| ||||||||||| |||||||||| ||||    
T  45032685 ttgtcctcgtgagcttacctcagttggtagggacaatgcataata 45032729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 11221 - 11134
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||||| ||||  ||||||||||||||||||||| || ||||||| |||| | ||| || |||||||||||||||| |||||    
T  11221 ttgtcctcgtgagcttagatcagttggtatggacaatgcataaaaatatgcaaggtctgggattcaaaccccggccaccacaaaaaaa 11134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 31561412 - 31561358
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  31561412 tgtcctcgtgagcttaactcagttggtatggacaatgcataataatatgcaaggt 31561358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 11637640 - 11637563
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccacca 259  Q
    ||||||||||| ||||||||||||||||||||||||||| || ||||||| |||||  ||  |||||||||| ||||||    
T  11637640 tgtcctcgtgagcttaactcagttggtatggacaatgcataa-aatatgcaaggttcggggttcgaaccccgaccacca 11637563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 22555223 - 22555311
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaata 269  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||   ||| || ||||||| |||||||  |||||||    
T  22555223 ttgtcctcgtgagcttaactcagttggtatggacaatgc-atataatatgcaaggtccgggaatcaaaccccgaccaccaccaaaaaata 22555311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 18995633 - 18995680
Alignment:
Q  177 gagttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  18995633 gagttgtcctcgtgaacttaactcagtttgtatggacaatgcataata 18995680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 37932322 - 37932407
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaa 266  Q
    |||||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||   ||  |||||||| |||||||||| ||||    
T  37932322 ttgtcctcgtgagcttagctcagttggtatggacaatgcataat-atatgcaaggtccggggttcgaaccctggccaccacaaaaaa 37932407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 10032337 - 10032257
Alignment:
Q  186 tcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||| ||||||||||||||||||||||||||| ||  |||||| |||||| ||  | |||| |||||||||||| |||||    
T  10032337 tcgtgagcttaactcagttggtatggacaatgcataa-catatgcaaggtttggggtttgaactccggccaccacaaaaaaa 10032257  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10199010 - 10199055
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  10199010 gttgtcctcgtgagcttagctcagttggtatggacaatgcataata 10199055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 6489000 - 6489087
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaata 269  Q
    ||||||||||| |||| ||||||||||| |||||||||| ||| |||||| |||| | ||  || |||||||||||||||  |||||||    
T  6489000 tgtcctcgtgagcttagctcagttggtagggacaatgcataat-atatgcaaggtctggggttcaaaccccggccaccaccaaaaaata 6489087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 6894103 - 6894174
Alignment:
Q  195 taactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||||||||| ||||||||||| ||||||| |||||  ||  ||||||| ||||||||||| |||||    
T  6894103 taactcagttggtatgaacaatgcaaaa-aatatgcaaggttcggggttcgaacctcggccaccacaaaaaaa 6894174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 31198701 - 31198745
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||    
T  31198701 ttgtcctcgtgatcttaactcagttggtaaggataatgcataata 31198745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 32283576 - 32283620
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    ||||||| |||| |||||||||||||||||||||| |||||||||    
T  32283576 ctcgtgagcttagctcagttggtatggacaatgcataataatatg 32283620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 33645757 - 33645721
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33645757 tgtcctcgtgagcttaactcagttggtatggacaatg 33645721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 40782616 - 40782568
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    |||||||||||  ||||||||||| |||||||||||||| |||||||||    
T  40782616 tgtcctcgtgagtttaactcagtttgtatggacaatgcataataatatg 40782568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 6624769 - 6624847
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||| |||||| ||||   ||  ||||||||||||||||||    
T  6624769 tgtcctcgtgagcttagctcagttggcatggacaatgcataat-atatgcaaggtccggggttcgaaccccggccaccac 6624847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 17046331 - 17046370
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  17046331 ctcgtgagcttaactcagttggtatggacaatgcataata 17046370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 29178439 - 29178478
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  29178439 ttgttctcgtgagcttaactcagttggtatggacaatgca 29178478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 40837971 - 40837936
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaat 216  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40837971 tgtcctcgtgaacttaactcagttggtatggacaat 40837936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 8543569 - 8543607
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  8543569 tgtcctcgtgagcttaactcagttggtttggacaatgca 8543607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 11844507 - 11844418
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataa 270  Q
    |||||| ||||| |||| ||||||||||| |||||||||| ||| |||||| |||||| ||  ||||| | || |||||||| ||||||||    
T  11844507 ttgtccacgtgaacttagctcagttggtaaggacaatgcataat-atatgcaaggtttagggttcgaatctcgaccaccacagaaaaataa 11844418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 15148720 - 15148754
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  15148720 ctcgtgaacttaactcagttggtatggacaatgca 15148754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 16089444 - 16089533
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataaac 272  Q
    |||||||| | ||||  ||||||||||||||||||||| ||| || ||| |||| | ||| ||||||||||||||||| | ||||| ||||    
T  16089444 gtcctcgtaagcttagttcagttggtatggacaatgcataat-atttgcaaggtctgggattcgaaccccggccaccataaaaaaaaaaac 16089533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 18589934 - 18589892
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||||||||||||||||| |||||||| ||||    
T  18589934 gtcctcgtgagcttaactcagttggtatgaacaatgcataata 18589892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 28207125 - 28207163
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  28207125 tgtcctcgtgagcttagctcagttggtatggacaatgca 28207163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 29695009 - 29695051
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||    
T  29695009 gtcctcgtgaccttaactcagttgatatggacaatgcataata 29695051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 41651002 - 41650964
Alignment:
Q  186 tcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  41651002 tcgtgagcttaactcagttggtatggacaatgcataata 41650964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 689539 - 689576
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  689539 ttgtcctcgtgaacttaactcagttgatatggacaatg 689576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 1808663 - 1808607
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    ||||||||||||| |||| ||||||||||||||| |||||| || ||||||| |||||    
T  1808663 gttgtcctcgtgaacttagctcagttggtatggataatgcataa-aatatgcaaggtt 1808607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 14880406 - 14880443
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  14880406 gtcctcgtgagcttaactcagttggtatgaacaatgca 14880443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 1512847 - 1512891
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||||||||||| ||| |||||||||| ||||    
T  1512847 ttgtcctcgtgagcttaactcagttagtagggacaatgcataata 1512891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 3389154 - 3389198
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||| |||||| | ||||||||||||||||||||||||| ||||    
T  3389154 ttgtcttcgtgaacataactcagttggtatggacaatgcataata 3389198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 11647196 - 11647275
Alignment:
Q  187 cgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||| |||||||||||||||| |||||||||| ||| |||||| |||||| ||  ||||| || | |||||||| |||||    
T  11647196 cgtgaacttaactcagttggtaaggacaatgcataat-atatgcaaggtttggggttcgaatcctgaccaccacaaaaaaa 11647275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 19248471 - 19248515
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| |||||||||||| ||||||||| ||||    
T  19248471 ttgtcctcgtgagcttagctcagttggtatagacaatgcataata 19248515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 22522870 - 22522826
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| ||| |||||||||||||||||| ||||    
T  22522870 ttgtcctcgtgagcttagctcggttggtatggacaatgcataata 22522826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 26034677 - 26034633
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||| ||||||| |||||||||||||||||| |||||||| ||||    
T  26034677 ttgttctcgtgagcttaactcagttggtatgaacaatgcataata 26034633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 28736894 - 28736930
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaat 216  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  28736894 ttgtcctcgtgagcttaactcagttgttatggacaat 28736930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 38495134 - 38495189
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    ||||||| |||| |||||||||||||||||||| |||||| || ||||||| |||||    
T  38495134 ttgtccttgtgaacttaactcagttggtatggataatgcataa-aatatgcaaggtt 38495189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 40027833 - 40027789
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||| ||||||| |||||||||||||| |||||||||||| ||||    
T  40027833 ttgttctcgtgagcttaactcagttggcatggacaatgcataata 40027789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 40056659 - 40056615
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||| |||| |||||||||||||||| |||||||||| ||||    
T  40056659 ttgtccttgtgagcttaactcagttggtaaggacaatgcataata 40056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 42505864 - 42505908
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| | |||| |||||||||||||||||||||| ||||    
T  42505864 ttgtcctcgtaagcttagctcagttggtatggacaatgcataata 42505908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 47313436 - 47313354
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||| |||| |||||||||||||||||||||| |||||||||| |||||  ||| | ||||| ||||||||||| |||||    
T  47313436 ctcgtgagcttagctcagttggtatggacaatgcataataatatgcaaggttcgggatttgaacctcggccaccacaaaaaaa 47313354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 32843330 - 32843245
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| |||||||||| ||||||||||| || ||||||| |||| | ||  || ||||||||||||||||||||||    
T  32843330 tgtcctcgtgagcttagctcagttggtttggacaatgcataa-aatatgcaaggtctggggttcaaaccccggccaccacacaaaaa 32843245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 44582717 - 44582803
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| || | |||||||||||||| ||||||| |||||||||| ||||   ||  ||||||||||||||||||| |||||    
T  44582717 tgtcctcgtgagctcagctcagttggtatgggcaatgcataataatatgcaaggtccggggttcgaaccccggccaccacaaaaaaa 44582803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 25874127 - 25874171
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  25874127 ctcgtgagcttaactcagttggtatggacaatgcataataatatg 25874171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 53996291 - 53996377
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||| |||| |||| |||||||||||||||||||||| ||| |||||| |||| | ||  ||||| ||||||||||||| |||||    
T  53996291 ttgtccttgtgagcttagctcagttggtatggacaatgcataat-atatgcaaggtctggggttcgaatcccggccaccacaaaaaaa 53996377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 7557602 - 7557564
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7557602 tgtcctcgtgagcttaactcagttggtatggacaatgca 7557564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 29631180 - 29631257
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    |||||| ||| |||| |||||||||||||||||||||| ||| |||||| |||||  ||| || |||||||||||||||    
T  29631180 gtcctcatgagcttagctcagttggtatggacaatgcataat-atatgcaaggttcgggattcaaaccccggccaccac 29631257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 8127456 - 8127511
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttt 237  Q
    ||||||||||| |||||||||||||||| |||||||||| || ||||||| ||||||    
T  8127456 tgtcctcgtgagcttaactcagttggtaaggacaatgcataa-aatatgcaaggttt 8127511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 7738661 - 7738700
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  7738661 ttgtcctcgtgagcttaactcagttggtagggacaatgca 7738700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 10498763 - 10498720
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||    
T  10498763 tgtcctcgtgagcttagctcagttggtatggacaatgcataata 10498720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 25441561 - 25441483
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||| |||| |||||||||||||||||||||| ||| |||||| |||| | ||  || |||||||||||||||| |||||    
T  25441561 gtgaacttagctcagttggtatggacaatgcataat-atatgcaaggtctggggttcaaaccccggccaccacaaaaaaa 25441483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 27532834 - 27532881
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    |||| |||||||||||||||||||||||| || |||||||||| ||||    
T  27532834 gtgaacttaactcagttggtatggacaatacataataatatgcaaggt 27532881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 46903901 - 46903944
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||  |||||||||||||||||||||||||| ||||    
T  46903901 tgtcctcgtgagattaactcagttggtatggacaatgcataata 46903944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 51882268 - 51882225
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||||    
T  51882268 tgtccccgtgagcttaactcagttggtatggacaatgcataata 51882225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 1149137 - 1149052
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| ||||||||||| |||||||||| ||| |||||| |||| | ||  |||||||| || ||||||| |||||    
T  1149137 tgtcctcgtgagcttagctcagttggtaaggacaatgcataat-atatgcaaggtctagggttcgaaccctggacaccacaaaaaaa 1149052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 7464558 - 7464516
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||||||||||||||| |||||||||| ||||    
T  7464558 gtcctcgtgagcttaactcagttggtagggacaatgcataata 7464516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 21506826 - 21506788
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  21506826 tgtcctcgtgagcttagctcagttggtatggacaatgca 21506788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 22251529 - 22251495
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaa 215  Q
    ||||||||||| |||||||||||||||||||||||    
T  22251529 tgtcctcgtgagcttaactcagttggtatggacaa 22251495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 32909365 - 32909284
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||| |||||||||||| |||||||||||||| || ||||||| ||||  |||  || || ||||||||||||| |||||    
T  32909365 ctcgtgagcttaactcagttagtatggacaatgcataa-aatatgcaaggtcctgggttcaaatcccggccaccacaaaaaaa 32909284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 38131026 - 38130984
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||    
T  38131026 gtccttgtgagcttaactcagttggtatggacaatgcataata 38130984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 39481134 - 39481172
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  39481134 tgtcctcgtgagcttagctcagttggtatggacaatgca 39481172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 44579629 - 44579667
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  44579629 tgtcctcgtgagcttagctcagttggtatggacaatgca 44579667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 25340990 - 25340914
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    ||||||||| |||| |||||||||||||||||||||| || ||||||| ||||   ||  || |||||||||||||||    
T  25340990 tcctcgtgagcttagctcagttggtatggacaatgcataa-aatatgcaaggtccggggttcaaaccccggccaccac 25340914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 28244171 - 28244134
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  28244171 gtcctcgtgagcttaactcagttggtatgaacaatgca 28244134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 34899088 - 34899133
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||    
T  34899088 gttgtcctcgtgatcttagctcagttcgtagggacaatgcataata 34899133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 40492996 - 40493045
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    |||||| |||||  || ||||||||||||||||||||||| |||||||||    
T  40492996 ttgtccacgtgagtttgactcagttggtatggacaatgcataataatatg 40493045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 54018476 - 54018420
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    ||||||||||| | ||||||| ||||||||||||||||||| || ||||||| |||||    
T  54018476 gttgtcctcgtaaccttaacttagttggtatggacaatgcataa-aatatgcaaggtt 54018420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 334917 - 334830
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaa-tgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||||  |||||||||||||||||||||| |||| || ||||||| ||||   ||  || |||||||||||||||| |||||    
T  334917 ttgtcctcgtgagtttaactcagttggtatggacaaatgcataa-aatatgcaaggtccggggttcaaaccccggccaccacaaaaaaa 334830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 2186496 - 2186460
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaat 216  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  2186496 ttgtgctcgtgaacttaactcagttggtatggacaat 2186460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 7827500 - 7827544
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||  |||||||||||| ||||||||||||| ||||    
T  7827500 ttgtcctcgtgagtttaactcagttgatatggacaatgcataata 7827544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 7829888 - 7829932
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||  |||||||||||| ||||||||||||| ||||    
T  7829888 ttgtcctcgtgagtttaactcagttgatatggacaatgcataata 7829932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 12043163 - 12043127
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  12043163 tcctcgtgagcttaactcagttggtaaggacaatgca 12043127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 19468451 - 19468487
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  19468451 gtgagcttaactcagttggtatggacaatgcataata 19468487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 20370347 - 20370265
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||| |||| |||||||| ||||||||||||| || ||||||| |||||| ||  ||||| ||| ||||||||| |||||    
T  20370347 tcctcgtgagcttagctcagttgatatggacaatgcataa-aatatgcaaggtttagggttcgaa-cccagccaccacaaaaaaa 20370265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 21331486 - 21331442
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| |||||||| ||||||||||||| ||||    
T  21331486 ttgtcctcgtgagcttagctcagttgttatggacaatgcataata 21331442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 27432226 - 27432270
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| ||||||| |||||||||| |||||||| ||||    
T  27432226 ttgtcctcgtgaacttaacttagttggtatgtacaatgcataata 27432270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 34326052 - 34326008
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||| ||||||| ||||| ||||||||||||||||||||| ||||    
T  34326052 ttgttctcgtgaacttaattcagttggtatggacaatgcataata 34326008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 48264031 - 48263947
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||| |||| |||| |||||||| || |||||||||| ||  |||||| |||||  ||| ||||||||||| ||||||| |||||    
T  48264031 tccttgtgagcttagctcagttgatagggacaatgcataaatatatgcaaggttcgggattcgaaccccggacaccacaaaaaaa 48263947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 49787732 - 49787688
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||||||||||| ||| |||||||||| ||||    
T  49787732 ttgtcctcgtgagcttaactcagttagtagggacaatgcataata 49787688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 51250301 - 51250265
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  51250301 tgtcctcgtgagcttaactcagttggtaaggacaatg 51250265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 53633686 - 53633642
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||||||||||||||| ||| |||||| ||||    
T  53633686 ttgtcctcgtgagcttaactcagttggtaaggataatgcataata 53633642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 4494938 - 4494855
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| |||| |||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||||||||| |||||    
T  4494938 gtcctcgtgagcttagctcagttggtatggacaatgcataa-aatatgcgaggtctgggattcgaa-cccggccaccacaaaaaaa 4494855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 17278962 - 17279001
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  17278962 ttgtcctcgtgagcttaactcagttggtatggacaatgca 17279001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 34828298 - 34828377
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccacca 259  Q
    ||||||||||||  ||| |||||||||||||||||||||| |||||||||  |||| |  |  |||||||||||||||||    
T  34828298 ttgtcctcgtgagtttagctcagttggtatggacaatgcataataatatgtaaggtctgaggttcgaaccccggccacca 34828377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 331953 - 331869
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| ||||||||||||||||  ||||||||| ||| |||||| |||||| ||| || |||| ||||||| ||| |||||    
T  331953 gtcctcgtgagcttaactcagttggtagagacaatgcataat-atatgcaaggtttgggattcaaacctcggccactacaaaaaaa 331869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 2726484 - 2726400
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||| | ||||||||||||||||||||||||||| ||| |||||| ||||   ||  ||||||||||| ||||||| |||||    
T  2726484 gtcctcgtaaacttaactcagttggtatggacaatgcataat-atatgcaaggtccggggttcgaaccccggtcaccacaaaaaaa 2726400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 788859 - 788944
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggag-tcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| ||||||||||| |||||||||| ||| |||||| ||| || |||| || ||||||| ||||||||||||||    
T  788859 tgtcctcgtgagcttatctcagttggtaaggacaatgcataat-atatgcaagg-ttcggagttcaaaccccgaccaccacacaaaaa 788944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 3358384 - 3358427
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||    
T  3358384 tgtcctcgtgaacttaactcagttggtttggacaatgcataata 3358427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 8831203 - 8831238
Alignment:
Q  184 cctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||||||||||||||||| ||||||||||    
T  8831203 cctcgtgatcttaactcagttggtaaggacaatgca 8831238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 28898849 - 28898892
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||    
T  28898849 tgtcctcgtgatcttaacttagttggtaaggacaatgcataata 28898892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 32053781 - 32053824
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||    
T  32053781 tgtcctcgtgagcttagctcagttggtatggacaatgcataata 32053824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 2108722 - 2108756
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||| |||||||||||||||||||||||||||    
T  2108722 ctcgtgagcttaactcagttggtatggacaatgca 2108756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 5271387 - 5271421
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaat 216  Q
    |||||||||| ||||||||||||||||||||||||    
T  5271387 gtcctcgtgaacttaactcagttggtatggacaat 5271421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 14679124 - 14679197
Alignment:
Q  187 cgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccaca 261  Q
    ||||| |||||||| ||||||| |||||||||| |||| ||||| |||||| ||  ||||| |||||||||||||    
T  14679124 cgtgaacttaactcggttggtaaggacaatgcataata-tatgcaaggtttgggtttcgaatcccggccaccaca 14679197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 12735312 - 12735256
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttt 237  Q
    |||||||||||| |||||||||||||||  |||||||||| || ||||||| ||||||    
T  12735312 ttgtcctcgtgagcttaactcagttggttgggacaatgcataa-aatatgcaaggttt 12735256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 16890515 - 16890478
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  16890515 gtcctcgtgagcttaacttagttggtatggacaatgca 16890478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 20744133 - 20744174
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||| |||| |||||||||||||||||||||| ||||    
T  20744133 tcctcgtgagcttagctcagttggtatggacaatgcataata 20744174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 28951394 - 28951435
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||| |||||||||||||||||| |||||||| ||||    
T  28951394 tcctcgtgagcttaactcagttggtatgaacaatgcataata 28951435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 361754 - 361790
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  361754 gtgagcttaactcagttggtatggacaatgcataata 361790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 5655376 - 5655297
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggag-tcgaaccccggccacca 259  Q
    |||||||||||| |||| ||||||||||| ||||||| || ||| ||||||  ||||  |||| |||||||||||||||||    
T  5655376 ttgtcctcgtgagcttagctcagttggtagggacaatacataat-atatgcacggttcgggagttcgaaccccggccacca 5655297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 7885532 - 7885572
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||| |||||| ||||||||||||||||||| |||||||    
T  7885532 gttgtcatcgtgagcttaactcagttggtatggtcaatgca 7885572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 9677227 - 9677271
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| |||||||||| ||||||||||| ||||    
T  9677227 ttgtcctcgtgagcttagctcagttggtttggacaatgcataata 9677271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 29740474 - 29740518
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| |||| ||||||||||||||||| ||||    
T  29740474 ttgtcctcgtgagcttagctcaattggtatggacaatgcataata 29740518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 31971521 - 31971565
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| | |||||||||||||||| |||||||||| ||||    
T  31971521 ttgtcctcgtaagcttaactcagttggtaaggacaatgcataata 31971565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 189657 - 189605
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  189657 tcctcgtgaacttaactcagttggtatggacaatgcataataatatgcaaggt 189605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 20243248 - 20243302
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||    
T  20243248 tgtcctcgtgagcttagctcagttggtatggacaatgcataataatatgcaaggt 20243302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 8883545 - 8883589
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  8883545 ttgtcctcgtgagcttaactcagttggtatggacaatgcataata 8883589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 4227596 - 4227558
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4227596 tgtcctcgtgagcttaactcagttggtatggacaatgca 4227558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 19416504 - 19416585
Alignment:
Q  178 agttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    |||||||||||||| |||| |||||||||||||||||||||| || ||||||| ||||   ||  || |||||||||||||||    
T  19416504 agttgtcctcgtgagcttagctcagttggtatggacaatgcataa-aatatgcaaggtccggggttcaaaccccggccaccac 19416585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 38728201 - 38728255
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    ||||||||||| |||| |||||||||||||||||||||| || ||||||| ||||    
T  38728201 tgtcctcgtgagcttagctcagttggtatggacaatgcataaaaatatgcaaggt 38728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 2916095 - 2916182
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataa 270  Q
    ||||| ||||| |||||||||||||||| |||||||||| ||| |||||| |||| | ||| ||||||||||| || ||| |||||||||    
T  2916095 tgtccccgtgaccttaactcagttggtacggacaatgcataat-atatgcaaggtctgggattcgaaccccggacatcac-caaaaataa 2916182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 9522906 - 9522982
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccacca 259  Q
    |||| ||||| |||| ||||||||||||| |||||||| ||| |||||| |||||| ||  |||||||||||||||||    
T  9522906 gtccgcgtgaacttagctcagttggtatgaacaatgcataat-atatgcaaggtttggggttcgaaccccggccacca 9522982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 21993176 - 21993213
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| |||||||||||||||||||||||||||    
T  21993176 gtcctcgtgagcttaactcagttggtatggacaatgca 21993213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 47342669 - 47342725
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttt 237  Q
    |||||||||||| |||| |||||||||||||||||||||| || ||||||| ||||||    
T  47342669 ttgtcctcgtgaacttagctcagttggtatggacaatgcataa-aatatgcaaggttt 47342725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 48980479 - 48980523
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||    
T  48980479 ttgtcctcgtgagcttagctcagttggtatggacaatgcataata 48980523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 5041332 - 5041375
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||    
T  5041332 tgtcctcgtgagcttaactgagttggtatggacaatgcataata 5041375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 10025987 - 10026065
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccac 260  Q
    ||||||||||| ||||||||||||||| ||||||||||| || ||||||| |||| | ||  || ||||||| |||||||    
T  10025987 tgtcctcgtgagcttaactcagttggtttggacaatgcataa-aatatgcaaggtatggggttcaaaccccgaccaccac 10026065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 19626593 - 19626550
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||    
T  19626593 tgtcctcgtgagcttaactcagttggtttggacaatgcataata 19626550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 24839480 - 24839519
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  24839480 ttgtcctcgtgagcttaactcagttggtatagacaatgca 24839519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 27263334 - 27263377
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||||    
T  27263334 tgtccccgtgaacttaactcagttggtatggacaatgcataata 27263377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 27270228 - 27270271
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||||    
T  27270228 tgtccccgtgaacttaactcagttggtatggacaatgcataata 27270271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 27462505 - 27462419
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||||| | || |||||||||||||||||||||| ||| |||||| ||||   ||  || |||||||||||||||| |||||    
T  27462505 ttgtcctcgtgagcatagctcagttggtatggacaatgcataat-atatgcaaggtccggggttcaaaccccggccaccacaaaaaaa 27462419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 27993098 - 27993059
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  27993098 ttgtcctcgtgagcttaactcagttggtatgaacaatgca 27993059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 34448678 - 34448635
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||    
T  34448678 tgtcctcgtgagcttaactcagttggtttggacaatgcataata 34448635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 46221019 - 46220980
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  46221019 ttgtcttcgtgagcttaactcagttggtatggacaatgca 46220980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 1399155 - 1399193
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  1399155 tgtcctcgtgagtttaactcagttggtatggacaatgca 1399193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 5526719 - 5526761
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||| |||||||||||||||||||||| ||||    
T  5526719 gtcctcgtgagcttagctcagttggtatggacaatgcataata 5526761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 7388107 - 7388022
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||||||||||||||  |||||||||| ||| |||||  |||||  ||| || ||||||| |||||||| |||||    
T  7388107 tgtcctcgtgagcttaactcagttggttgggacaatgcataat-atatgtaaggttcgggattcaaaccccgaccaccacaaaaaaa 7388022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 10244721 - 10244763
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||| |||||||||||||||||||||| ||||    
T  10244721 gtcctcgtgagcttagctcagttggtatggacaatgcataata 10244763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 19793797 - 19793875
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccacca 259  Q
    |||||||||||  |||||||||||| |||||||||||||  ||||||||| || ||  ||  ||||||| |||||||||    
T  19793797 tgtcctcgtgagtttaactcagttgatatggacaatgcatgataatatgcaagattcggggttcgaacctcggccacca 19793875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 31038590 - 31038552
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  31038590 tgtcctcgtgagcttagctcagttggtatggacaatgca 31038552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 35142217 - 35142132
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| |||||||| ||||||||||||| ||| |||||| | ||||  |  |||||||||| ||||||| ||||||    
T  35142217 tgtcctcgtgagcttagctcagttgatatggacaatgcataat-atatgcaaagtttgaggttcgaaccccgaccaccacccaaaaa 35142132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 37624536 - 37624621
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||  |||||||||||||||||||||| ||| |||||| ||||   ||  ||||| ||||||||||||| |||||    
T  37624536 tgtcctcgtgagctttcctcagttggtatggacaatgcataat-atatgcaaggtcgggggttcgaatcccggccaccacaaaaaaa 37624621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 39801700 - 39801742
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| |||| |||||||||||||||||||||| ||||    
T  39801700 gtcctcgtgagcttagctcagttggtatggacaatgcataata 39801742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 44454506 - 44454559
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    |||||||||| |||||||||||||||| |||||||||| || ||||||| |||||    
T  44454506 gtcctcgtgagcttaactcagttggtagggacaatgcataa-aatatgcaaggtt 44454559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 34722082 - 34722041
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaataatatg 229  Q
    |||| |||||||||||||||||| |||||||| |||||||||    
T  34722082 gtgagcttaactcagttggtatgaacaatgcataataatatg 34722041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 46551989 - 46552026
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  46551989 gtcctcgtgagcttaactcagttggtatagacaatgca 46552026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 48103744 - 48103688
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    ||||||||||||| |||||||||||||||  |||||||||| || ||||||| |||||    
T  48103744 gttgtcctcgtgagcttaactcagttggttgggacaatgcataa-aatatgcaaggtt 48103688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 4905268 - 4905323
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    |||||||||||| ||||||||||||| | ||||||||||| || ||||||| |||||    
T  4905268 ttgtcctcgtgagcttaactcagttgttgtggacaatgcataa-aatatgcaaggtt 4905323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 8879811 - 8879748
Alignment:
Q  185 ctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaacc 249  Q
    ||||||| ||||||||||||||||| ||||||||| ||| |||||| |||||  ||| |||||||    
T  8879811 ctcgtgagcttaactcagttggtatagacaatgcataat-atatgcaaggttcgggattcgaacc 8879748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 21099842 - 21099798
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||  ||| |||||||||||||||||||||| ||||    
T  21099842 ttgtcctcgtgaatttagctcagttggtatggacaatgcataata 21099798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 21136824 - 21136860
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    |||| |||||| |||||||||||||||||||||||||    
T  21136824 tgtcttcgtgagcttaactcagttggtatggacaatg 21136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 22991452 - 22991416
Alignment:
Q  188 gtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  22991452 gtgagcttaactcagttggtatggacaatgcataata 22991416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 23413103 - 23413071
Alignment:
Q  192 tcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||||||||||||||||||| ||||    
T  23413103 tcttaactcagttggtatggacaatgcataata 23413071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 30793112 - 30793076
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||| |||| |||||||||||||||||||||||||||    
T  30793112 tccttgtgagcttaactcagttggtatggacaatgca 30793076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 32228431 - 32228475
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||||||||| |||||||||||| ||| ||||    
T  32228431 ttgtcctcgtgagcttaactcagctggtatggacaaagcataata 32228475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 36343586 - 36343550
Alignment:
Q  199 tcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  36343586 tcagttggtatggacaatgcataataatatgcaaggt 36343550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 37930036 - 37930080
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| ||||||||||| |||||||||| ||||    
T  37930036 ttgtcctcgtgagcttatctcagttggtaaggacaatgcataata 37930080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 75176 - 75230
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggt 235  Q
    |||| |||||| |||||||||||||||||||| |||||| |||||||||| ||||    
T  75176 tgtcttcgtgagcttaactcagttggtatggataatgcataataatatgcaaggt 75230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 43034409 - 43034367
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  43034409 gtcctcgtgagcttaactcagttggtatggacaatgcataata 43034367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 52270098 - 52270013
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| |||||||||||||||||||||| ||| |||||| |||| | ||  ||||| ||| ||||||||| |||||    
T  52270098 tgtcctcgtgagcttagctcagttggtatggacaatgcataat-atatgcaaggtctgggcctcgaatcccagccaccacagaaaaa 52270013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 23809943 - 23810027
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| |||| |||||||||||||||||| ||| ||| |||||| |||||  ||  || |||||||||||||||| |||||    
T  23809943 gtcctcgtgagcttagctcagttggtatggacaaagcataat-atatgcaaggttcagggttcaaaccccggccaccacagaaaaa 23810027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 56361877 - 56361796
Alignment:
Q  186 tcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||| ||||||||||||| |||| ||||||||  ||||||| | |||| | ||  ||||||||||||||||||| |||||    
T  56361877 tcgtgagcttaactcagttgatatgaacaatgcatgataatatacaaggtctagggttcgaaccccggccaccacaaaaaaa 56361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 35021538 - 35021447
Alignment:
Q  178 agttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaataa 270  Q
    |||||||||||||| |||| |||||||| |||||||||| || || ||||||| |||||  ||  |||||||||| |||| ||| ||||||||    
T  35021538 agttgtcctcgtgagcttagctcagttgatatggacaatacataa-aatatgcaaggttcggggttcgaaccccgaccactacaaaaaaataa 35021447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 51002280 - 51002335
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttt 237  Q
    ||||||||||| ||||||||||||||||| ||||||||| || ||||||| ||||||    
T  51002280 tgtcctcgtgagcttaactcagttggtatagacaatgcataa-aatatgcaaggttt 51002335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 2186401 - 2186358
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||    
T  2186401 tgtcctcgtgagcttagctcagttggtatggacaatgcataata 2186358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 14137043 - 14137082
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaa 220  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  14137043 tgtcctcgtgagcttaactcagttggtaaggacaatgcaa 14137082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 15170167 - 15170124
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||    
T  15170167 tgtcctcgtgaacttaactcagttggtatgaacaatgcataata 15170124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 16431608 - 16431694
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||| |||||| |||| |||||||||||||||||||||| || ||||||| |||| | ||  || |||||||||| ||||| |||||    
T  16431608 ttgtcatcgtgaacttagctcagttggtatggacaatgcataa-aatatgcaaggtctggggttcaaaccccggcctccacaaaaaaa 16431694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 30780121 - 30780160
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  30780121 ttgtccacgtgagcttaactcagttggtatggacaatgca 30780160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 43722758 - 43722801
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||  |||||||||||||||||||||||||| ||||    
T  43722758 tgtcctcgtgagtttaactcagttggtatggacaatgcataata 43722801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 46853867 - 46853910
Alignment:
Q  193 cttaactcagttggtatggacaatgcaaaataatatgcgaggtt 236  Q
    |||||||||||||||||||||||| || |||||||||| |||||    
T  46853867 cttaactcagttggtatggacaatacataataatatgcaaggtt 46853910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 7030961 - 7030923
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  7030961 tgtcctcgtgagcttaactcagttggtatagacaatgca 7030923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 24665059 - 24664974
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||||| |||| ||||||||||||||| |||||| ||| |||||| ||||   ||  |||||||||| |||||||| |||||    
T  24665059 tgtcctcgtgagcttagctcagttggtatggagaatgcataat-atatgcaaggtccggggttcgaaccccgaccaccacaaaaaaa 24664974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 38340387 - 38340353
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaat 216  Q
    |||||||||| ||||||||||||||||||||||||    
T  38340387 gtcctcgtgagcttaactcagttggtatggacaat 38340353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 7230271 - 7230316
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||| |||| ||||||||||| |||||||||| ||||    
T  7230271 gttgtcctcgtgagcttagctcagttggtaaggacaatgcataata 7230316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 9935957 - 9936002
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatat 228  Q
    ||||||| | |||| ||||||||||||||||||||||| |||||||    
T  9935957 tcctcgtaaacttagctcagttggtatggacaatgcaatataatat 9936002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 9946421 - 9946458
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  9946421 gtcctcgtgagcttagctcagttggtatggacaatgca 9946458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 19588148 - 19588232
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| |||| |||| ||||||||||||||||| || ||||||| ||||   ||  || |||||||||||||||| |||||    
T  19588148 gtcctcgtgagcttagctcaattggtatggacaatgcataa-aatatgcaaggtccagggttcaaaccccggccaccacaaaaaaa 19588232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 20043260 - 20043223
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgc 218  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  20043260 tgtcctcgtgagcttaactcagttggtagggacaatgc 20043223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 24885866 - 24885833
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaat 216  Q
    ||||||||| ||||||||||||||||||||||||    
T  24885866 tcctcgtgagcttaactcagttggtatggacaat 24885833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29908047 - 29908092
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||| |||||| |||||||||||||||| |||||||||| ||||    
T  29908047 gttgtcttcgtgagcttaactcagttggtaaggacaatgcataata 29908092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 31879945 - 31879862
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaa 266  Q
    ||||||||||| |||||||||||||  |||||||||||| ||| |||||| | |||| ||| || |||| ||||||||||| ||||    
T  31879945 tgtcctcgtgagcttaactcagttgtaatggacaatgcataat-atatgc-aagtttcggattcaaacctcggccaccacaaaaaa 31879862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 32180824 - 32180908
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| |||| |||||||||||| ||||||||| || ||||||| | || | ||  |||||||||| |||||||| |||||    
T  32180824 gtcctcgtgagcttagctcagttggtatagacaatgcataa-aatatgcaaagtctggggttcgaaccccgaccaccacaaaaaaa 32180908  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 35287574 - 35287490
Alignment:
Q  182 gtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||||||||| |||| ||||||||||||| |||||||| || ||||||| ||||   ||  || |||||||||||||||| |||||    
T  35287574 gtcctcgtgagcttagctcagttggtatgaacaatgcataa-aatatgcaaggtccggggttccaaccccggccaccacaaaaaaa 35287490  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 39842078 - 39842037
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||||||||||||| || |||||||||| ||||    
T  39842078 tcctcgtgatcttaactcagttgataaggacaatgcataata 39842037  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 42845016 - 42845061
Alignment:
Q  179 gttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    ||||||||||||| |||||||||||||| | |||||||||| ||||    
T  42845016 gttgtcctcgtgagcttaactcagttggaaaggacaatgcataata 42845061  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 8494979 - 8495023
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| |||| ||||||||||| |||||||||| ||||    
T  8494979 ttgtcctcgtgaacttagctcagttggtagggacaatgcataata 8495023  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 13276121 - 13276165
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgcaaaata 224  Q
    |||||||||||| ||||||||| |||||| |||||||||| ||||    
T  13276121 ttgtcctcgtgagcttaactcaattggtagggacaatgcataata 13276165  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 161134 - 161221
Alignment:
Q  181 tgtcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaata 269  Q
    |||||| |||| ||||||||||||||||||||||||||| || ||||||| |||||  ||  || ||||||| |||||||  |||||||    
T  161134 tgtccttgtgagcttaactcagttggtatggacaatgcataa-aatatgcaaggttcggggttcaaaccccgaccaccaccaaaaaata 161221  T

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Target: scaffold0743 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 1485 - 1438
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgc 230  Q
    ||||||||| |||| | |||||||||||||||||||| ||||||||||    
T  1485 tcctcgtgagcttagcacagttggtatggacaatgcataataatatgc 1438  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 185255 - 185294
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatgca 219  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  185255 ttgtcctcgtgagcttagctcagttggtatggacaatgca 185294  T

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Target: scaffold0328 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 6988 - 7058
Alignment:
Q  197 actcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    |||| |||||||||||||||||| |||||||||  |||| | ||  ||||| ||||||||||||| |||||    
T  6988 actcggttggtatggacaatgcataataatatgtaaggtctggggttcgaatcccggccaccacaaaaaaa 7058  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 56776 - 56813
Alignment:
Q  180 ttgtcctcgtgatcttaactcagttggtatggacaatg 217  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  56776 ttgtcctcgtgagcttagctcagttggtatggacaatg 56813  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 53446 - 53363
Alignment:
Q  183 tcctcgtgatcttaactcagttggtatggacaatgcaaaataatatgcgaggttttggagtcgaaccccggccaccacacaaaaa 267  Q
    ||||||||| |||||||||||||| | |||||||||| || ||||||| |||| | ||  || ||||||| |||||||| |||||    
T  53446 tcctcgtgagcttaactcagttggaagggacaatgcataa-aatatgcaaggtctggggttcaaaccccgaccaccacaaaaaaa 53363  T

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