View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8846_high_5 (Length: 297)
Name: NF8846_high_5
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_high_5 |
 | |
|
| [»] scaffold0056 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0249 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
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| [»] scaffold0012 (2 HSPs) |
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| [»] scaffold0497 (2 HSPs) |
| | |
|
| [»] scaffold0410 (1 HSPs) |
| | |
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| [»] scaffold0450 (1 HSPs) |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 21292051 - 21292332
Alignment:
| Q |
8 |
gagcacagatgctatgacttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttct |
107 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21292051 |
gagcacatatgctatgactgtttcagaaatgcggattggaatccccattatacttgatctgatctctgtctcaacaaagggttccaaacccatttcttct |
21292150 |
T |
|
| Q |
108 |
cttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgac |
207 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||| ||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21292151 |
cttgttttccctcccaattcagggtacaacaaaaccttttcacccttttctatcttggatgtagctctgtcgtaaatgctagcccttacccagaagtgac |
21292250 |
T |
|
| Q |
208 |
gaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21292251 |
gaaccaaggtttggtaagtaggtccattcaagaacttgaagtattctactaggccttgtgcttcgtagtacttgctgatgtc |
21292332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 19933038 - 19933142
Alignment:
| Q |
173 |
tctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcg |
272 |
Q |
| |
|
|||||| || ||||| |||||| ||||||| |||| ||||| || || || ||||||||||||| | |||||||| |||||||||||||||||||| |
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|
| T |
19933038 |
tctgtcatagatgctttcccttaaccagaagggacgtaccaaagtctgataggtaggtccattcagaaggttgaagtagcctactaggccttgtgcttcg |
19933137 |
T |
|
| Q |
273 |
tagta |
277 |
Q |
| |
|
||||| |
|
|
| T |
19933138 |
tagta |
19933142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 3836626 - 3836705
Alignment:
| Q |
30 |
tcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctct |
109 |
Q |
| |
|
||||||||| | | |||||| || |||| ||||||||| |||||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
3836626 |
tcagaaatgtgaactggaattcccattacacttgatcttatctctgtcttaaagaaaggttctaaacccatttcttctct |
3836705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 22666888 - 22666925
Alignment:
| Q |
82 |
caaagggttccaaacccatttcttctcttgttttccct |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
22666888 |
caaagggttccaaacccatttcttcccttgatttccct |
22666925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 15471616 - 15471435
Alignment:
| Q |
8 |
gagcacagatgctatgacttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15471616 |
gagcacagatgctatgacttgttcagaaatgcggattggaatcccaattatacttgacctgatctttgtctgaacaaagggttccaaacccatttcttct |
15471517 |
T |
|
| Q |
108 |
cttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctag |
189 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15471516 |
cttgttttccctgccaattcagggtacatcaaaaccttctcattctcttctatcttggatgcagatctgtcgtaagtgctag |
15471435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 15143200 - 15143232
Alignment:
| Q |
83 |
aaagggttccaaacccatttcttctcttgtttt |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
15143200 |
aaagggttccaatcccatttcttctcttgtttt |
15143232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 82 - 289
Target Start/End: Complemental strand, 31246 - 31039
Alignment:
| Q |
82 |
caaagggttccaaacccatttcttctcttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgta |
181 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || ||||| ||||||||||| ||||||| ||||| ||||| ||| |
|
|
| T |
31246 |
caaagggctccaaacccatttcttctcttgatttccctgctaattcagggtacaacagaaccttttcatcctcttcaatcttggctgcagctctgttgta |
31147 |
T |
|
| Q |
182 |
aatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctg |
281 |
Q |
| |
|
||||| |||| |||||||||||||||||| || || | |||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||| || |
|
|
| T |
31146 |
gatgcttgcccgtacccagaagtgacgaactaaagtctagtaagttggtccattcaagaacttgaagtattctactaaggcttgtgcttcgtagtacttg |
31047 |
T |
|
| Q |
282 |
ctgatgtc |
289 |
Q |
| |
|
|||||||| |
|
|
| T |
31046 |
ctgatgtc |
31039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 289
Target Start/End: Complemental strand, 162685 - 162436
Alignment:
| Q |
40 |
ggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccctgccaatttagggtacatcaa |
139 |
Q |
| |
|
||||||||||||| || || || || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||| || || | || |
|
|
| T |
162685 |
ggattggaatccccatgatgctggacctgatctctgtttgcacaaagggttccaaacccatttcctctcttgttttcccttccaattctggataaagcag |
162586 |
T |
|
| Q |
140 |
aacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaag |
239 |
Q |
| |
|
||| | |||||| ||||| | ||||| ||||| ||||||||| ||||| ||||||||||||||||||||||| | ||| |||||||| |||||||| | |
|
|
| T |
162585 |
aactttctcatcttcttcaagcttggctgcagctctgtcgtatatgcttgcccttacccagaagtgacgaactagggtctggtaagttggtccatttaga |
162486 |
T |
|
| Q |
240 |
aacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
|| |||||||| ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
162485 |
aatttgaagtattctactaagccttgtgcttcgtagtacttgctgatgtc |
162436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 22379743 - 22380014
Alignment:
| Q |
18 |
gctatgacttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttcc |
117 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
22379743 |
gctatgacttgttcagaaatgtggattgaaatccccattatgcttgatttaatctctgtctgaacaaagggttccaaacccatttcttctctggtcttcc |
22379842 |
T |
|
| Q |
118 |
ctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggt |
217 |
Q |
| |
|
|| | | || || |||| || ||| | |||| | ||||| || || | |||| ||| || || || || ||||| |||||||| || ||||| | || |
|
|
| T |
22379843 |
cttctagttctggatacaacagaactttctcagcttcttcaatttttgcagcagctctatcatagatacttgccctaacccagaaatgtcgaacaagcgt |
22379942 |
T |
|
| Q |
218 |
ttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
|| || || |||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
22379943 |
ctgatatgttggtccattcaggaacttgaagtattctactaagccttgtgcttcgtagtacttgctgatgtc |
22380014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 11239313 - 11239577
Alignment:
| Q |
24 |
acttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccctgcca |
123 |
Q |
| |
|
||||||||||||||| | || ||||| || |||||||||||||| | || ||||||||||| ||||||||||||||||||| ||| || |||||| || |
|
|
| T |
11239313 |
acttgttcagaaatgtgaatgggaatacccattatacttgatcttagttccgtctgaacaaaaggttccaaacccatttcttatctggtcttccctttca |
11239412 |
T |
|
| Q |
124 |
atttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggta |
223 |
Q |
| |
|
|| || | || || ||| | |||||||||||| ||||| | |||| ||| || || ||| | || ||||||||||| || ||||||| ||||| || |
|
|
| T |
11239413 |
gttctggatgcagcagaactttctcatcctcttcaatctttgcagcagctctatcatagatggttgctcttacccagaaatggcgaaccagcgtttgata |
11239512 |
T |
|
| Q |
224 |
agtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgt |
288 |
Q |
| |
|
||| |||||||| |||||||||||||| ||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
11239513 |
agttggtccatttaagaacttgaagtattctactaagccttgtgtttcgtagtacttgctgatgt |
11239577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 4422025 - 4421744
Alignment:
| Q |
8 |
gagcacagatgctatgacttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttct |
107 |
Q |
| |
|
||||||| |||| || ||||||||| | ||| ||||||||||||| ||||| |||||||| |||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
4422025 |
gagcacatatgcaataacttgttcatagatgtggattggaatccccattatgcttgatcttatctatgtctgatcaaagggttccaaacccatttcttct |
4421926 |
T |
|
| Q |
108 |
cttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgac |
207 |
Q |
| |
|
|| ||||||||| | | || || |||| || ||| | |||| | ||||| || |||| || | |||||| || ||||| ||||||||||| || |||| |
|
|
| T |
4421925 |
ctagttttcccttctagttgtggatacaacagaactttctcagcttcttcaattttggcagctgttctgtcatagatgcttgcccttacccaaaaatgac |
4421826 |
T |
|
| Q |
208 |
gaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
|||| | || ||||| || |||||||| | ||||||||||| ||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
4421825 |
gaacaagagtctggtaggttggtccatttagaaacttgaagtattctactaagtcttgtgcttcgtagtacttgctgatgtc |
4421744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 16553528 - 16553424
Alignment:
| Q |
173 |
tctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcg |
272 |
Q |
| |
|
||||||||||||||| ||||| |||| || || | |||||| || || || || |||||||||| | |||||||| ||||||| ||||||||||||| |
|
|
| T |
16553528 |
tctgtcgtaaatgctttcccttccccaaaaatgtctaaccaaagtctgatatgttggtccattcagcatgttgaagtagtctactaagccttgtgcttcg |
16553429 |
T |
|
| Q |
273 |
tagta |
277 |
Q |
| |
|
||||| |
|
|
| T |
16553428 |
tagta |
16553424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 16612134 - 16612238
Alignment:
| Q |
173 |
tctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcg |
272 |
Q |
| |
|
||||||||||||||| ||||| |||| || || | |||||| || || || || |||||||||| | |||||||| ||||||| ||||||||||||| |
|
|
| T |
16612134 |
tctgtcgtaaatgctttcccttccccaaaaatgtctaaccaaagtctgatatgttggtccattcagcatgttgaagtagtctactaagccttgtgcttcg |
16612233 |
T |
|
| Q |
273 |
tagta |
277 |
Q |
| |
|
||||| |
|
|
| T |
16612234 |
tagta |
16612238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 17009882 - 17010163
Alignment:
| Q |
8 |
gagcacagatgctatgacttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttct |
107 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | || |||||||| ||||| |||||||| || || |||||||||||||||||||||||||| |||||| |
|
|
| T |
17009882 |
gagcacatatgccatgacttgttcagaaatgtgaatgggaatccccattatgcttgatcttatttccgtctgaacaaagggttccaaacccatctcttct |
17009981 |
T |
|
| Q |
108 |
cttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgac |
207 |
Q |
| |
|
|| || |||||| || || || |||| | ||| | ||||| |||||||||||| | |||| ||| || || ||| | || || ||||||||||||| |
|
|
| T |
17009982 |
ctggtcttccctttcagttctggatacagaagaactttctcattctcttctatctttgcagcagctctatcatagatgttcgctctaacccagaagtgac |
17010081 |
T |
|
| Q |
208 |
gaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
||| || || || || || |||||||| ||||| |||||||| ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
17010082 |
gaatcagcgtctgataggttggtccatttaagaatttgaagtattctactaagccttgtgcttcgtagtacttgctgatgtc |
17010163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 17020688 - 17020969
Alignment:
| Q |
8 |
gagcacagatgctatgacttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttct |
107 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | || |||||||| ||||| |||||||| || || |||||||||||||||||||||||||| |||||| |
|
|
| T |
17020688 |
gagcacatatgccatgacttgttcagaaatgtgaatgggaatccccattatgcttgatcttatttccgtctgaacaaagggttccaaacccatctcttct |
17020787 |
T |
|
| Q |
108 |
cttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgac |
207 |
Q |
| |
|
|| || |||||| || || || |||| | ||| | ||||| |||||||||||| | |||| ||| || || ||| | || || ||||||||||||| |
|
|
| T |
17020788 |
ctggtcttccctttcagttctggatacagaagaactttctcattctcttctatctttgcagcagctctatcatagatgttcgctctaacccagaagtgac |
17020887 |
T |
|
| Q |
208 |
gaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
||| || || || || || |||||||| ||||| |||||||| ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
17020888 |
gaatcagcgtctgataggttggtccatttaagaatttgaagtattctactaagccttgtgcttcgtagtacttgctgatgtc |
17020969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 15222985 - 15222917
Alignment:
| Q |
182 |
aatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagta |
250 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||| ||||| || || || ||||||||||| |||||||| |
|
|
| T |
15222985 |
aatgctggccctgacccagaagtgacgcaccagcgtttgatatgttggaccattcaagaagttgaagta |
15222917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 18137885 - 18137805
Alignment:
| Q |
195 |
acccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtag |
275 |
Q |
| |
|
||||||||||| | |||| ||||| || || ||||||||||| | ||||||||||||| || |||||||||||||||| |
|
|
| T |
18137885 |
acccagaagtgccttaccagcgtttgatatgttggtccattcaacattttgaagtaatctaataagccttgtgcttcgtag |
18137805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 289
Target Start/End: Complemental strand, 21131421 - 21131173
Alignment:
| Q |
41 |
gattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccctgccaatttagggtacatcaaa |
140 |
Q |
| |
|
|||||||||||| || || || || || |||| ||| || ||||||||||||||| ||||||| ||| ||||||||||| | |||| || || | || | |
|
|
| T |
21131421 |
gattggaatccccatgatgctagacctaatctatgtttgcacaaagggttccaaatccatttcctctattgttttcccttctaattctggataaagcaga |
21131322 |
T |
|
| Q |
141 |
acctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaaga |
240 |
Q |
| |
|
|| | |||||| ||||| | ||||| ||||| |||||| || ||||| ||||||||||||||||||||||| || || || ||||| |||||||||| | |
|
|
| T |
21131321 |
actttctcatcttcttcaagcttggctgcagctctgtcatagatgctcgcccttacccagaagtgacgaactaatgtctgataagttggtccattcagaa |
21131222 |
T |
|
| Q |
241 |
acttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
21131221 |
acttgaagtattctactaagccttgtgcttcgtagtacttgctgatgtc |
21131173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 19166768 - 19166503
Alignment:
| Q |
24 |
acttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccctgcca |
123 |
Q |
| |
|
||||||||||| ||| | || |||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |||| ||| ||||| ||| || |
|
|
| T |
19166768 |
acttgttcagagatgtgaatgggaatccccattatgcttgatcttatctccgtctgaacaaagggttccaaacccatctcttttctggtttttcctttca |
19166669 |
T |
|
| Q |
124 |
atttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggta |
223 |
Q |
| |
|
|| | | || || ||| | ||||| |||||||||||| | |||| ||| || || ||||| || || |||||||| ||||||| | || | || |
|
|
| T |
19166668 |
gttctagatgcagcagaactttctcattctcttctatctttgcagcagctctatcatagatgcttgctctaacccagaaatgacgaattagagtctaata |
19166569 |
T |
|
| Q |
224 |
agtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
19166568 |
agttggtccatttaagaatttgaagtaatctactaagccttgtgcttcgtagtacttgctgatgtc |
19166503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 21212796 - 21212531
Alignment:
| Q |
24 |
acttgttcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccctgcca |
123 |
Q |
| |
|
|||||||| ||||| ||||||||||||| || ||||| || || |||||||| || ||||||||||||||||||||||| ||||||||||||||| | | |
|
|
| T |
21212796 |
acttgttctgaaatatggattggaatccccatgatactggacctaatctctgtttgcacaaagggttccaaacccatttcctctcttgttttcccttcta |
21212697 |
T |
|
| Q |
124 |
atttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggta |
223 |
Q |
| |
|
||| || |||| | | | | |||||| ||||| | ||||| |||| | |||| || ||||| |||||||||||||| |||||||| | || || || |
|
|
| T |
21212696 |
attctggatacaactgacctttctcatcttcttcaagcttggcagcagctttgtcatagatgctcgcccttacccagaaatgacgaactagtgtctgata |
21212597 |
T |
|
| Q |
224 |
agtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctgctgatgtc |
289 |
Q |
| |
|
|| |||||||||| ||||| ||||| ||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
21212596 |
ggttggtccattcagaaactttaagtattctactaagccttttgcttcgtagtaattgctgatgtc |
21212531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 44818978 - 44818941
Alignment:
| Q |
82 |
caaagggttccaaacccatttcttctcttgttttccct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44818978 |
caaagggttccaaacccatttcttctcttgatttccct |
44818941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 44818887 - 44818810
Alignment:
| Q |
173 |
tctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagta |
250 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||||| | ||||| || || || |||||||||||||| || |||||||| |
|
|
| T |
44818887 |
tctgtcgtagatgcttgccctaacccataagtgatgtaccaacgtctgataggtaggtccattcaaaaagttgaagta |
44818810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 286
Target Start/End: Complemental strand, 11983 - 11757
Alignment:
| Q |
60 |
cttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttcta |
159 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||| |||||| |||||| | || |||| || ||| ||||| | |
|
|
| T |
11983 |
cttgatcttatctctgtgcaatcaaagggttccaaacccatttcttctcttgatttcccttccaattcagggtataacagaaccatctgatcttcttcaa |
11884 |
T |
|
| Q |
160 |
tcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactag |
259 |
Q |
| |
|
||||| ||| | | ||||||||||||| || |||||| |||| |||||||||| || ||||| ||||||||||| | || |||||||| ||||||| |
|
|
| T |
11883 |
gcttggttgctgctttgtcgtaaatgcttgctcttacctagaaatgacgaaccagagtctggtatgtaggtccatttagaaatttgaagtattctactaa |
11784 |
T |
|
| Q |
260 |
gccttgtgcttcgtagtacctgctgat |
286 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
11783 |
gccttgtgcttcgtagtacttgctgat |
11757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 286
Target Start/End: Complemental strand, 131657 - 131453
Alignment:
| Q |
82 |
caaagggttccaaacccatttcttctcttgttttccctgccaatttagggtacatcaaaacctgctcatcctcttctatcttggatgcagatctgtcgta |
181 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| ||||| | |||| | || |||| |||||| ||||| | ||| | ||| | ||||||| |
|
|
| T |
131657 |
caaagggttccaaacccatttcttctctagatttccctttcaattcaaggtataccaggaccttctcatcttcttcaagcttagctgcttctttgtcgta |
131558 |
T |
|
| Q |
182 |
aatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgtagtacctg |
281 |
Q |
| |
|
|| ||| || ||||||||||| || ||||||| || ||||| ||||||||||| || |||||||| || ||||||| ||||||||||||||||||| || |
|
|
| T |
131557 |
aacgcttgctcttacccagaaatgtcgaaccagagtctggtatgtaggtccatttaaaaacttgaattattctactaagccttgtgcttcgtagtacttg |
131458 |
T |
|
| Q |
282 |
ctgat |
286 |
Q |
| |
|
||||| |
|
|
| T |
131457 |
ctgat |
131453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 277
Target Start/End: Complemental strand, 28708164 - 28707931
Alignment:
| Q |
44 |
tggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccctgccaatttagggtacatcaaaacc |
143 |
Q |
| |
|
||||||||| ||||| || ||| ||||||| || ||||||||||||||||||||||| | | | ||||||| | | || |||| ||||| ||| |
|
|
| T |
28708164 |
tggaatccccattatgctggatttgatctcagtgcttacaaagggttccaaacccatttcccttttagatttcccttcaagttctgggtttatcaatacc |
28708065 |
T |
|
| Q |
144 |
tgctcatcctcttctatcttggatgcagatctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaact |
243 |
Q |
| |
|
| ||| ||||||| | ||| ||||| ||| ||||| |||||||||||||||||||| | | ||||| || || || ||||||||||| | || | |
|
|
| T |
28708064 |
ttttcagcctcttcaagcttagatgcttctctatcgtagatgctagcccttacccagaaaagtctcaccaaagtctgataggtaggtccatttagcaagt |
28707965 |
T |
|
| Q |
244 |
tgaagtaatctactaggccttgtgcttcgtagta |
277 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |
|
|
| T |
28707964 |
tgaagtaacctactaagccttgtgcttcgtagta |
28707931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 22748607 - 22748528
Alignment:
| Q |
30 |
tcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctct |
109 |
Q |
| |
|
||||||||||| | ||||| || |||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
22748607 |
tcagaaatgcgaaccggaattcccattatacttgatcttatctctgtctttgagaagggtttcaaacccatttcttctct |
22748528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 131438 - 131517
Alignment:
| Q |
30 |
tcagaaatgcggattggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctct |
109 |
Q |
| |
|
||||||||||| | ||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
131438 |
tcagaaatgcgaaccggaattcccattatacttgatcttatctctgtctttgagaagggttccaaacccatttcttctct |
131517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 131581 - 131658
Alignment:
| Q |
173 |
tctgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagta |
250 |
Q |
| |
|
|||||| ||||| || ||||| |||||||||||||| |||| ||||| || || || ||||||||||| |||||||| |
|
|
| T |
131581 |
tctgtcataaatactggccctgacccagaagtgacgcaccagcgtttgatatgttggaccattcaagaaattgaagta |
131658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0497 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0497
Description:
Target: scaffold0497; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 3444 - 3380
Alignment:
| Q |
45 |
ggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctct |
109 |
Q |
| |
|
||||| || |||||||||||||| ||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
3444 |
ggaattcccattatacttgatcttatctctgtccttacgaaaggttccaaacccatttcttctct |
3380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0497; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 6586 - 6516
Alignment:
| Q |
180 |
taaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagta |
250 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||| ||||| || || || ||||||||||| |||||||| |
|
|
| T |
6586 |
taaatgctggccctgacccagaagtgacgtaccagcgtttgatatgttggaccattcaagaaattgaagta |
6516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0410 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0410
Description:
Target: scaffold0410; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 10391 - 10455
Alignment:
| Q |
45 |
ggaatcccaattatacttgatctgatctctgtctgaacaaagggttccaaacccatttcttctct |
109 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10391 |
ggaatgcccattatacttgatcttatctctgtctttgagaagggttccaaacccatttcttctct |
10455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 2702 - 2761
Alignment:
| Q |
60 |
cttgatctgatctctgtctgaacaaagggttccaaacccatttcttctcttgttttccct |
119 |
Q |
| |
|
|||||||||||||| || | |||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
2702 |
cttgatctgatctcagttctatcaaagggttcaaaacccatttcttctcttgatttccct |
2761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 13032 - 13134
Alignment:
| Q |
175 |
tgtcgtaaatgctagcccttacccagaagtgacgaaccaaggtttggtaagtaggtccattcaagaacttgaagtaatctactaggccttgtgcttcgta |
274 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| ||||| || || || |||||| |||||| || |||||||| ||| || ||||||||||| || |
|
|
| T |
13032 |
tgtcgtaaatgtttgccctaacccagaagtgacgtaccaacgtctgataggtaggtacattcagaaagttgaagtatcttacaagcccttgtgcttcata |
13131 |
T |
|
| Q |
275 |
gta |
277 |
Q |
| |
|
||| |
|
|
| T |
13132 |
gta |
13134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 12939 - 12976
Alignment:
| Q |
82 |
caaagggttccaaacccatttcttctcttgttttccct |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
12939 |
caaagggttccaaacccatttcttcccttgatttccct |
12976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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