View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8846_high_6 (Length: 288)
Name: NF8846_high_6
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 13312240 - 13311964
Alignment:
| Q |
1 |
caataaagaaagaaaattgaaaaacgattaataatagtagtatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcc |
100 |
Q |
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| T |
13312240 |
caataaagaaagaaaattgaaaaatgattaataatagtagtatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcc |
13312141 |
T |
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| Q |
101 |
cttgtaattggatcataagagagacatcaatttattaagattctcgaagagatattcataattggaagagatgtagacacattgaccacagtacctgctt |
200 |
Q |
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| T |
13312140 |
cttgtaattggatcataagagagatatcaatttattaagattctcgaagagatattcataattggaaga-atgtagacacattgaccacagtacctgctt |
13312042 |
T |
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| Q |
201 |
gtctgcggacttaatgatgcaattagggtggttatgtcatatagataaagattgtctaacagggcccatgatgtccat |
278 |
Q |
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| T |
13312041 |
gtctgcggacttaatgatgcaattagggtggttatgtgatatagataaagattgtctaacagggccaatgatgtccat |
13311964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 41 - 278
Target Start/End: Original strand, 12907935 - 12908179
Alignment:
| Q |
41 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttc---ccttgtaatt----ggatcataagagagacatcaattt |
133 |
Q |
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| T |
12907935 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaattttaaggatcataagagagacagcaattt |
12908034 |
T |
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| Q |
134 |
attaagattctcgaagagatattcataattggaagagatgtagacacattgaccacagtacctgcttgtctgcggacttaatgatgcaattagggtggtt |
233 |
Q |
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| T |
12908035 |
attaagatactcgaagggatattcataataggatgagaggtagaaactttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggtt |
12908134 |
T |
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| Q |
234 |
atgtcatatagataaagattgtctaacagggcccatgatgtccat |
278 |
Q |
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| T |
12908135 |
atgtgacacagattgagattgtctaacagggccaatgatgtccat |
12908179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 1566278 - 1566229
Alignment:
| Q |
46 |
acctcattaatcattggcaggaattcagcagcaggttggaataaattaac |
95 |
Q |
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| T |
1566278 |
acctcatcgatcataggcaggaattcagcagcaggttggaataaattaac |
1566229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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