View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8846_high_8 (Length: 246)
Name: NF8846_high_8
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4121562 - 4121322
Alignment:
| Q |
1 |
tcttcccgactgcagctggactatattcgtcggccacaggtttttcctttcttgataataaattttta-------------aaattttaactttgatcgt |
87 |
Q |
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| T |
4121562 |
tcttcccgactgcagctggactatattcgttggccacaggtttttcctttcttgataataaatttttatattgaatttttaaaattttaactttgatcgt |
4121463 |
T |
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| Q |
88 |
tatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaattt |
187 |
Q |
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| T |
4121462 |
tatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaattt |
4121363 |
T |
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| Q |
188 |
ttgaattgtactccgtgactgcgattgtagccacaatgtca |
228 |
Q |
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| T |
4121362 |
ttgaattgtactccgtgactgcgattgtagccacaatgtca |
4121322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 4131359 - 4131230
Alignment:
| Q |
71 |
attttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaa---acattgaagagaaagaatcattatccattgcagatgtacacatc |
167 |
Q |
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| T |
4131359 |
atttgaactttcatcattttctgcagtaaatttgactttttaaaacctgctaataaacattgaagaaaaagaatcattatccattgcagatgtgtggatc |
4131260 |
T |
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| Q |
168 |
cttatcatatcaccaaatttttgaattgta |
197 |
Q |
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| T |
4131259 |
cttggcatattaccaaagttttaaattgta |
4131230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 4363879 - 4363981
Alignment:
| Q |
122 |
aaacattgaagagaaagaatcattatccattgcagatgtacacatccttatcatatcaccaaatttttgaattgtactccgtgactgcgattgtagccac |
221 |
Q |
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| T |
4363879 |
aaacattgaagggaaagaaccattgtccattgcagatatatgtatccttatcagatgaccaaagttttaaattgtaatcctcgacttcaattgtagcctc |
4363978 |
T |
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| Q |
222 |
aat |
224 |
Q |
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||| |
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| T |
4363979 |
aat |
4363981 |
T |
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