View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8846_low_1 (Length: 569)
Name: NF8846_low_1
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_low_1 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 37 - 552
Target Start/End: Complemental strand, 3050 - 2537
Alignment:
| Q |
37 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
136 |
Q |
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| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
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| Q |
137 |
nnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
236 |
Q |
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| T |
2950 |
--ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
2853 |
T |
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| Q |
237 |
cataatcttgacccgatgcacatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
336 |
Q |
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| T |
2852 |
cataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
2753 |
T |
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| Q |
337 |
gtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgactggtaaaagtaagag |
436 |
Q |
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| T |
2752 |
gtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgactggtaaaagtaagag |
2653 |
T |
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| Q |
437 |
ggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctcttaagttgaaaggaacg |
536 |
Q |
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| T |
2652 |
ggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctcttaagttgaaaggaacg |
2553 |
T |
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| Q |
537 |
ttgaagagtcatgatg |
552 |
Q |
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| T |
2552 |
ttgaagagtcatgatg |
2537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 6 - 552
Target Start/End: Original strand, 17006016 - 17006560
Alignment:
| Q |
6 |
tggacatcaagttcttgaataggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
105 |
Q |
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| T |
17006016 |
tggacatcaagttcttcaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
17006115 |
T |
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| Q |
106 |
acacaaggtgaccctccaaaccagnnnnnnnnnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttga |
205 |
Q |
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| T |
17006116 |
acacaaggtgaccctccaaaccagaaaaaaa--ggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttga |
17006213 |
T |
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| Q |
206 |
acttccatattggaaggacaatcttctgcgtcataatcttgacccgatgcacatcgagaaaaatgtgttggataatatcatatatactttgcttaacgat |
305 |
Q |
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| T |
17006214 |
acttccatattggaaggacaatcttttgcgtcataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgat |
17006313 |
T |
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| Q |
306 |
agttcaaagagtaaagaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgg |
405 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17006314 |
agttcaaagaataaagaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccga |
17006413 |
T |
|
| Q |
406 |
caatttttactttgactggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcat |
505 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17006414 |
caatttttactttgactggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcat |
17006513 |
T |
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| Q |
506 |
tgacttagaagctcttaagttgaaaggaacgttgaagagtcatgatg |
552 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
17006514 |
tgacttggaagctcttaagttgaaaggaatgttgaagagtcatgatg |
17006560 |
T |
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