View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8846_low_12 (Length: 244)
Name: NF8846_low_12
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 46008800 - 46008566
Alignment:
| Q |
1 |
attgttttagtacttgatgtgtattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgagtcttggggaatgaga |
100 |
Q |
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| T |
46008800 |
attgttttagtacttgatgtgtattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgagtcttggggaatgaga |
46008701 |
T |
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| Q |
101 |
tgtgtttgttgagggtacttttccttggtttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatcttctttcgctttttct |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46008700 |
tgtgtttgttgagggtacttttccttgatttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatcttctttcactttttct |
46008601 |
T |
|
| Q |
201 |
tgttctctgtttttcactgtgttggtgatgtccat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
46008600 |
tgttctctgtttttcactgtgttggtgatgtccat |
46008566 |
T |
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