View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8846_low_9 (Length: 250)
Name: NF8846_low_9
Description: NF8846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8846_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4121592 - 4121830
Alignment:
| Q |
1 |
aggatgctcttgtgctcaacatcaagggtacaaactctcaaacagttctagagcttacccccagaaagagaaatcccctacattagccaacaaaaccaaa |
100 |
Q |
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| T |
4121592 |
aggatgctcttatgctcaacatcaagggtacaaactctcaaacagttctagagcttacccccagaaagagaaatctcctacattagccaacaaaaccaaa |
4121691 |
T |
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| Q |
101 |
ttccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4121692 |
atccacaaatctaaaatagaaatgaaaagaatgacaattctcaatgcaagcatcaaataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtat |
4121791 |
T |
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| Q |
201 |
gatacatagacaaagaaatctcttatgaattcgagaata |
239 |
Q |
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| T |
4121792 |
gatacatagacaaagaaatctcttatgaattcgagaata |
4121830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 18151876 - 18151798
Alignment:
| Q |
157 |
ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgag |
235 |
Q |
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| T |
18151876 |
ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgag |
18151798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 4347224 - 4347133
Alignment:
| Q |
63 |
agaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc |
154 |
Q |
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| T |
4347224 |
agaaagagaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatc |
4347133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 4118662 - 4118762
Alignment:
| Q |
54 |
cttacccccagaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcat |
153 |
Q |
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||||| |||||||||||||||| |||||| | |||||||||| |||||||| |||| ||||||||||| ||||||| |||||| ||| ||||||||||| |
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| T |
4118662 |
cttacacccagaaagagaaatctcctacactgcccaacaaaactaaattccataaataaaaaatagaaaggaaaagagtgacaaatcttaatgcaagcat |
4118761 |
T |
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| Q |
154 |
c |
154 |
Q |
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| T |
4118762 |
c |
4118762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 4363650 - 4363559
Alignment:
| Q |
63 |
agaaagagaaatcccctacattagccaacaaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc |
154 |
Q |
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|||||| |||||| |||||| ||||| ||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4363650 |
agaaagggaaatctcctacaccagccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgacaattctcaatgcaagcatc |
4363559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 4131534 - 4131589
Alignment:
| Q |
91 |
caaaaccaaattccacaaatcaaaaatagaaatgaaaagaatgacaattctcaatg |
146 |
Q |
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| T |
4131534 |
caaaaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctcaatg |
4131589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 28372514 - 28372592
Alignment:
| Q |
157 |
ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgag |
235 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372514 |
ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgag |
28372592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 28380336 - 28380414
Alignment:
| Q |
157 |
ataaccgtcgaggtgatgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgag |
235 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28380336 |
ataaccgtcgaggtgacgtcttgacctaaaagatcaaatggtatgatacatagacaaagaaatctcttatgaattcgag |
28380414 |
T |
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