View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8847_high_2 (Length: 324)
Name: NF8847_high_2
Description: NF8847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8847_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 38947527 - 38947819
Alignment:
| Q |
19 |
attccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaacaaccttcaagttcaatcatccaccaatggag |
118 |
Q |
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| T |
38947527 |
attccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaacaaccttgaagctcaatcatccaccaatggag |
38947626 |
T |
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| Q |
119 |
ccacaagatccaccattgctcagcacaacaccaaccaagagatcaaagctgagtttgctgccccacctgatgtcactacttctccggtgaagccgaaggc |
218 |
Q |
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| T |
38947627 |
ccacaagatccaccattgctcagcacaacaccaaccaagagatcaaagctgagtttgctgccccacctgctgtcactacttctccggtgaagccgaaggc |
38947726 |
T |
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| Q |
219 |
gccaccggttaataaatctgcctcaacttgatctaccatgtgtctgtccctttgcttctgctgttttttgctatcatgtgtctgtcattttct |
311 |
Q |
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| T |
38947727 |
gccaccggttaataaatctgcctcaacttgatctaccatgtgtctgtccctttgcttctgctgttttttgttatcatgtgtctgtcattttct |
38947819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 38941608 - 38941902
Alignment:
| Q |
19 |
attccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaacaaccttcaagttcaatcatccaccaatggag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
38941608 |
attccatctgagatatttgctgctgatatcttcaccaaaccatttgacttgactccacccaataccaacaaccttgaagctcaatcatccaccaatggag |
38941707 |
T |
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| Q |
119 |
ccacaagatccaccattgctcagcacaacaccaaccaagagatcaaagctgagtttgctgccccacctgatgtcactacttctccggtgaagccgaaggc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38941708 |
ccacaagatccaccattgctcagcacaacaccaaccaagagatcaaagctgagtttgctgccccacctgctgtcactacttctccggtgaagccgaaggc |
38941807 |
T |
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| Q |
219 |
gccaccggttaataaatctgcctcaacttgatctaccatgtgtctgtccctttgcttctgctgttttttgctatcatgt--gtctgtcattttct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||| |
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| T |
38941808 |
gccaccggttaataaatctgcctcaacttgatctaccatgtgtctgtccctttgcttctgcttttttgtgttatcatgtgcgtctgtcattttct |
38941902 |
T |
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