View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8847_high_3 (Length: 254)
Name: NF8847_high_3
Description: NF8847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8847_high_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0071 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 25588920 - 25589173
Alignment:
| Q |
1 |
ttggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25588920 |
ttggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagcttc |
25589019 |
T |
|
| Q |
101 |
accattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589020 |
accattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgt |
25589119 |
T |
|
| Q |
201 |
tcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589120 |
tcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaa |
25589173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 26374135 - 26374388
Alignment:
| Q |
1 |
ttggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26374135 |
ttggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagcttc |
26374234 |
T |
|
| Q |
101 |
accattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26374235 |
accattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgt |
26374334 |
T |
|
| Q |
201 |
tcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
26374335 |
tcaagtgcgtattttctagccaacgccatttcttccttctccaaaacaaaaaaa |
26374388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 17918604 - 17918724
Alignment:
| Q |
1 |
ttggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
17918604 |
ttggaataaaatccccattcagcactgtagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgatacttgcgcgtgacttttgcttc |
17918703 |
T |
|
| Q |
101 |
accattcaccttgggtgcatc |
121 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
17918704 |
accaatcaccttgggtgcatc |
17918724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 17918770 - 17918890
Alignment:
| Q |
125 |
aatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac |
224 |
Q |
| |
|
|||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
17918770 |
aataacaccagctccgccgcttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcgcgttttctagccaac |
17918869 |
T |
|
| Q |
225 |
gccaattcttccttctccgaa |
245 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
17918870 |
gccatttcttccttctccgaa |
17918890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 15428837 - 15428919
Alignment:
| Q |
3 |
ggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg |
85 |
Q |
| |
|
|||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
15428837 |
ggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg |
15428919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 15429010 - 15429079
Alignment:
| Q |
158 |
ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc |
227 |
Q |
| |
|
|||||||||||||||||| | || ||||| ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
15429010 |
ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc |
15429079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 14127470 - 14127350
Alignment:
| Q |
1 |
ttggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagcttc |
100 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14127470 |
ttggaataaattgcccattcagcaatttagccaacgcctctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtttgcttc |
14127371 |
T |
|
| Q |
101 |
accattcaccttgggtgcatc |
121 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
14127370 |
accaatcaccttgggtgcatc |
14127350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 14127304 - 14127185
Alignment:
| Q |
125 |
aatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac |
224 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
14127304 |
aatatcaccagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgctcaagtgcgtgttttctaaccaac |
14127205 |
T |
|
| Q |
225 |
gccaattcttccttctccga |
244 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
14127204 |
accatttcttccttctccga |
14127185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 12917440 - 12917522
Alignment:
| Q |
3 |
ggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg |
85 |
Q |
| |
|
|||||| | ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
12917440 |
ggaatatagtccccattcagcactcttgcaaacgcccctttacttgcccaaacaacatcttcattatcggaaataaacttgcg |
12917522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 12927368 - 12927437
Alignment:
| Q |
158 |
ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
12927368 |
ctccctttcctcctcactaaccttagcatctaatttaacctgttcaagagcctgctttctagccaacgcc |
12927437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 8758133 - 8758201
Alignment:
| Q |
6 |
ataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaa |
74 |
Q |
| |
|
||||| || ||||||| |||| | |||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8758133 |
ataaattctccattcaacactcttgccaacgcacctttacttgcccaaacaacatcatcattatcagaa |
8758201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 24081306 - 24081215
Alignment:
| Q |
152 |
tacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgccaattcttccttctccg |
243 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||| ||| ||||||||||||| |
|
|
| T |
24081306 |
tactttctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcctgctttctagccaacaccatctcttccttctccg |
24081215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 24081462 - 24081380
Alignment:
| Q |
38 |
ccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttagcttcaccattcaccttgggtgcat |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| || | || ||||||||||||||| ||||| |
|
|
| T |
24081462 |
ccctttacttgcccaaacaacatcatcattatcagaatgaaacttgcgcgtaacaattgcgccaccattcaccttggatgcat |
24081380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 33401 - 33319
Alignment:
| Q |
3 |
ggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg |
85 |
Q |
| |
|
|||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
33401 |
ggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg |
33319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 33228 - 33159
Alignment:
| Q |
158 |
ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc |
227 |
Q |
| |
|
|||||||||||||||||| | || ||||| ||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
33228 |
ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc |
33159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University